miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 5' -54.1 NC_001847.1 + 107731 0.66 0.932936
Target:  5'- aCCGAccgcgcCGGCGGCaacagcGCCCCCCc -3'
miRNA:   3'- -GGUUuaa---GUCGCCGcuua--CGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 73918 0.66 0.932936
Target:  5'- cCCGAagcGUUCgaGGUGGaGAuuGUGCUCCCCGg -3'
miRNA:   3'- -GGUU---UAAG--UCGCCgCU--UACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 64440 0.66 0.932936
Target:  5'- gUCGuagUCGGCGGCcAcgGCCagCCCCGg -3'
miRNA:   3'- -GGUuuaAGUCGCCGcUuaCGG--GGGGU- -5'
6651 5' -54.1 NC_001847.1 + 134644 0.66 0.92766
Target:  5'- aCAGGggggUUGGCGcGCGGccGCCCCgCCGc -3'
miRNA:   3'- gGUUUa---AGUCGC-CGCUuaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 31831 0.66 0.92766
Target:  5'- aCAGGggggUUGGCGcGCGGccGCCCCgCCGc -3'
miRNA:   3'- gGUUUa---AGUCGC-CGCUuaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 56890 0.66 0.92766
Target:  5'- uCCAGGUgc-GCGGCGAcgucgGCCUCCa- -3'
miRNA:   3'- -GGUUUAaguCGCCGCUua---CGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 27721 0.66 0.92766
Target:  5'- gCAAGggcgUCAGCGGCGGAaGCCgCg-- -3'
miRNA:   3'- gGUUUa---AGUCGCCGCUUaCGGgGggu -5'
6651 5' -54.1 NC_001847.1 + 120021 0.66 0.92766
Target:  5'- cCCGGGUg-AGCGGCcuagGCCCUCCc -3'
miRNA:   3'- -GGUUUAagUCGCCGcuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 134955 0.67 0.922134
Target:  5'- gCGGGggCGGgGGCGGggGCCCCgggggCCAa -3'
miRNA:   3'- gGUUUaaGUCgCCGCUuaCGGGG-----GGU- -5'
6651 5' -54.1 NC_001847.1 + 102152 0.67 0.922134
Target:  5'- aCCA----CGGCGGCGcg-GCCCgCCGc -3'
miRNA:   3'- -GGUuuaaGUCGCCGCuuaCGGGgGGU- -5'
6651 5' -54.1 NC_001847.1 + 32142 0.67 0.922134
Target:  5'- gCGGGggCGGgGGCGGggGCCCCgggggCCAa -3'
miRNA:   3'- gGUUUaaGUCgCCGCUuaCGGGG-----GGU- -5'
6651 5' -54.1 NC_001847.1 + 61936 0.67 0.922134
Target:  5'- uCCGcg-UCAGCGGCGGcgcgGCCCgCgCGg -3'
miRNA:   3'- -GGUuuaAGUCGCCGCUua--CGGG-GgGU- -5'
6651 5' -54.1 NC_001847.1 + 7471 0.67 0.916359
Target:  5'- ------cCAGCGGaacauCGAGUGCCUCUCAa -3'
miRNA:   3'- gguuuaaGUCGCC-----GCUUACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 76562 0.67 0.916359
Target:  5'- cCCAcg--CAGcCGGCGGcccgGCCCCCg- -3'
miRNA:   3'- -GGUuuaaGUC-GCCGCUua--CGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 51736 0.67 0.916359
Target:  5'- aCCAAAUgcCGGC-GCGGcUGCUCUCCAa -3'
miRNA:   3'- -GGUUUAa-GUCGcCGCUuACGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 48506 0.67 0.916359
Target:  5'- uCCGG----GGCGGCGcg-GCCCgCCCAc -3'
miRNA:   3'- -GGUUuaagUCGCCGCuuaCGGG-GGGU- -5'
6651 5' -54.1 NC_001847.1 + 45260 0.67 0.916359
Target:  5'- gCCGGcgUgAgcGCGGCGAA-GCCCgCCGc -3'
miRNA:   3'- -GGUUuaAgU--CGCCGCUUaCGGGgGGU- -5'
6651 5' -54.1 NC_001847.1 + 47588 0.67 0.916359
Target:  5'- cCCGAGgcgUAGUGGCGGuagAUGCCCgCgAa -3'
miRNA:   3'- -GGUUUaa-GUCGCCGCU---UACGGGgGgU- -5'
6651 5' -54.1 NC_001847.1 + 89010 0.67 0.916359
Target:  5'- gUCAAGUUC-GCGG-GGAUGCCCUa-- -3'
miRNA:   3'- -GGUUUAAGuCGCCgCUUACGGGGggu -5'
6651 5' -54.1 NC_001847.1 + 65559 0.67 0.912169
Target:  5'- cUCAcg--CGGUGGCGucacacggccacgugGCCCCCCAg -3'
miRNA:   3'- -GGUuuaaGUCGCCGCuua------------CGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.