miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 21864 0.66 0.847959
Target:  5'- aGGUGgug-CGgggGCUGCGGCGCgcUGCCg -3'
miRNA:   3'- gCCACaggaGCa--UGGUGUCGCG--ACGG- -5'
6652 3' -57 NC_001847.1 + 13004 0.66 0.847959
Target:  5'- gGGUGgggggCCU-GUGCCgagcaguagACGGCGCagcaUGCCg -3'
miRNA:   3'- gCCACa----GGAgCAUGG---------UGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 18245 0.66 0.846369
Target:  5'- gGGUGgauccaagauggCCgCG-ACCGCGGCGCgGCUa -3'
miRNA:   3'- gCCACa-----------GGaGCaUGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 86659 0.66 0.847959
Target:  5'- aCGGUGcucUUCUCGgagcucGCCGC-GCGCUuuuGCCu -3'
miRNA:   3'- -GCCAC---AGGAGCa-----UGGUGuCGCGA---CGG- -5'
6652 3' -57 NC_001847.1 + 28102 0.66 0.847958
Target:  5'- gCGGUGcCCUCGggGCCAggaccgaggcCGGCGaCguuggGCCc -3'
miRNA:   3'- -GCCACaGGAGCa-UGGU----------GUCGC-Ga----CGG- -5'
6652 3' -57 NC_001847.1 + 71583 0.66 0.863422
Target:  5'- aGG-GUCacaGUGCCGCccGGCGCcgGCCc -3'
miRNA:   3'- gCCaCAGgagCAUGGUG--UCGCGa-CGG- -5'
6652 3' -57 NC_001847.1 + 133399 0.66 0.844771
Target:  5'- gCGGUGgaguaCCUCugcgcgcggcugGCCGCGGCGCgGCg -3'
miRNA:   3'- -GCCACa----GGAGca----------UGGUGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 61928 0.66 0.85579
Target:  5'- aGGcGUCgcgaugaaCUCGcagACCGCAGC-CUGCCc -3'
miRNA:   3'- gCCaCAG--------GAGCa--UGGUGUCGcGACGG- -5'
6652 3' -57 NC_001847.1 + 80250 0.66 0.847958
Target:  5'- cCGG-GUCgacggCGUGCCGCAGCaggGCCu -3'
miRNA:   3'- -GCCaCAGga---GCAUGGUGUCGcgaCGG- -5'
6652 3' -57 NC_001847.1 + 105600 0.67 0.797148
Target:  5'- cCGGcGgCCUCcaggGCCGCgAGCGCgGCCg -3'
miRNA:   3'- -GCCaCaGGAGca--UGGUG-UCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 132275 0.67 0.806033
Target:  5'- gCGGcgGcCCgcgCGUcgGCCugGGCGCUGgCg -3'
miRNA:   3'- -GCCa-CaGGa--GCA--UGGugUCGCGACgG- -5'
6652 3' -57 NC_001847.1 + 80799 0.67 0.805151
Target:  5'- ---cGUCCUCGUugCGCugguccgGGCGCgugaggcGCCg -3'
miRNA:   3'- gccaCAGGAGCAugGUG-------UCGCGa------CGG- -5'
6652 3' -57 NC_001847.1 + 93401 0.67 0.823327
Target:  5'- cCGGaucacgGUCUcCGUGCagcgCACGGCGCUGUa -3'
miRNA:   3'- -GCCa-----CAGGaGCAUG----GUGUCGCGACGg -5'
6652 3' -57 NC_001847.1 + 124854 0.67 0.83172
Target:  5'- ---aGUCUUCGcUGCUGgAGuCGCUGCCg -3'
miRNA:   3'- gccaCAGGAGC-AUGGUgUC-GCGACGG- -5'
6652 3' -57 NC_001847.1 + 77945 0.67 0.814762
Target:  5'- cCGGggcGUCCUgcCGUAUCAUcGCGCgUGCUu -3'
miRNA:   3'- -GCCa--CAGGA--GCAUGGUGuCGCG-ACGG- -5'
6652 3' -57 NC_001847.1 + 50483 0.67 0.823327
Target:  5'- cCGGcgccgGUCCggcCGUAUCuaucaACGGCGCggGCCa -3'
miRNA:   3'- -GCCa----CAGGa--GCAUGG-----UGUCGCGa-CGG- -5'
6652 3' -57 NC_001847.1 + 61529 0.67 0.813896
Target:  5'- aCGG-GUCUUCuacgagcuccccgGUGCCGgGGgGCUGCUu -3'
miRNA:   3'- -GCCaCAGGAG-------------CAUGGUgUCgCGACGG- -5'
6652 3' -57 NC_001847.1 + 29462 0.67 0.806033
Target:  5'- gCGGcgGcCCgcgCGUcgGCCugGGCGCUGgCg -3'
miRNA:   3'- -GCCa-CaGGa--GCA--UGGugUCGCGACgG- -5'
6652 3' -57 NC_001847.1 + 14625 0.67 0.806033
Target:  5'- aCGuG-GUUUUCG-ACCGCGGCGCUcgcgcGCCg -3'
miRNA:   3'- -GC-CaCAGGAGCaUGGUGUCGCGA-----CGG- -5'
6652 3' -57 NC_001847.1 + 102836 0.67 0.806033
Target:  5'- gCGG-GUCC-CGUuCCGCGGCgGCgucgcgggGCCg -3'
miRNA:   3'- -GCCaCAGGaGCAuGGUGUCG-CGa-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.