miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 28307 0.71 0.55891
Target:  5'- gGGUGUguuaggccccgacCCUgCGUGCCgcucgccggcggGCAGCGCgGCCg -3'
miRNA:   3'- gCCACA-------------GGA-GCAUGG------------UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 42398 0.71 0.55991
Target:  5'- aCGGcgagGUCCUgGccUGCCAC-GCGCUGCg -3'
miRNA:   3'- -GCCa---CAGGAgC--AUGGUGuCGCGACGg -5'
6652 3' -57 NC_001847.1 + 80887 0.71 0.59011
Target:  5'- ---aGcCgCUCGUcgggcgccACCGCAGCGCUGCCc -3'
miRNA:   3'- gccaCaG-GAGCA--------UGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 102753 0.71 0.59011
Target:  5'- aCGGgg-CgUCGUGCCGCGuGCGCgcGCCg -3'
miRNA:   3'- -GCCacaGgAGCAUGGUGU-CGCGa-CGG- -5'
6652 3' -57 NC_001847.1 + 81348 0.71 0.590111
Target:  5'- gGGgcgcagaccUCCUCGcggcgGCUGCGGUGCUGCCg -3'
miRNA:   3'- gCCac-------AGGAGCa----UGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 27309 0.71 0.590111
Target:  5'- gCGGUG-CCggcgggCGUGuCCACGGCaauCUGCCg -3'
miRNA:   3'- -GCCACaGGa-----GCAU-GGUGUCGc--GACGG- -5'
6652 3' -57 NC_001847.1 + 9664 0.71 0.600247
Target:  5'- gGGcGUCCUCGcgcCCGCcGCgaGCUGCCg -3'
miRNA:   3'- gCCaCAGGAGCau-GGUGuCG--CGACGG- -5'
6652 3' -57 NC_001847.1 + 21941 0.71 0.607357
Target:  5'- cCGGaGUCCgagcUCGUcguccgggcgcuggGCCGCGGCGCcgguUGCCg -3'
miRNA:   3'- -GCCaCAGG----AGCA--------------UGGUGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 96329 0.71 0.60939
Target:  5'- uCGGUGUCggugggcggcgggCUggCGUGCgAC-GCGCUGCCg -3'
miRNA:   3'- -GCCACAG-------------GA--GCAUGgUGuCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 105771 0.7 0.620583
Target:  5'- gCGGcGgccgCCUCG-GCgGCAGCGCcGCCg -3'
miRNA:   3'- -GCCaCa---GGAGCaUGgUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 31516 0.7 0.630767
Target:  5'- ---cGUCCUCGU-CCGCGGCGUcGUCc -3'
miRNA:   3'- gccaCAGGAGCAuGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 2958 0.7 0.630767
Target:  5'- gCGGcGgccgCCUCG-GCgCGCAGCGCcGCCg -3'
miRNA:   3'- -GCCaCa---GGAGCaUG-GUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 134329 0.7 0.630768
Target:  5'- ---cGUCCUCGU-CCGCGGCGUcGUCc -3'
miRNA:   3'- gccaCAGGAGCAuGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 87111 0.7 0.651132
Target:  5'- aGGUGUCUUCG-GCCAgcGCGCgGCUc -3'
miRNA:   3'- gCCACAGGAGCaUGGUguCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 89985 0.7 0.651132
Target:  5'- gCGGUG-CUgCGcGCCGCGGgGCUGCa -3'
miRNA:   3'- -GCCACaGGaGCaUGGUGUCgCGACGg -5'
6652 3' -57 NC_001847.1 + 124618 0.7 0.6552
Target:  5'- ---aGUCCUCGUuccACCgcuccauggcccgcaGCAGCGCgggGCCg -3'
miRNA:   3'- gccaCAGGAGCA---UGG---------------UGUCGCGa--CGG- -5'
6652 3' -57 NC_001847.1 + 100457 0.7 0.6552
Target:  5'- ---aGUCCUCGcgccagcgcuccuccUGCCGCuGCGCgGCCg -3'
miRNA:   3'- gccaCAGGAGC---------------AUGGUGuCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 31161 0.7 0.661295
Target:  5'- gCGGUGgCCUucUGcGCgGCcGCGCUGCCg -3'
miRNA:   3'- -GCCACaGGA--GCaUGgUGuCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 133974 0.7 0.661296
Target:  5'- gCGGUGgCCUucUGcGCgGCcGCGCUGCCg -3'
miRNA:   3'- -GCCACaGGA--GCaUGgUGuCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 15550 0.7 0.671436
Target:  5'- cCGGUGcgcgcgcggCCgUCGgGCCGCGGCcgccGCUGCCc -3'
miRNA:   3'- -GCCACa--------GG-AGCaUGGUGUCG----CGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.