miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 18953 0.7 0.672449
Target:  5'- gCGGcGUCCgggCGgcgacgaccagcgcgGCCGCGGCGCccgcgGCCg -3'
miRNA:   3'- -GCCaCAGGa--GCa--------------UGGUGUCGCGa----CGG- -5'
6652 3' -57 NC_001847.1 + 20458 0.68 0.769641
Target:  5'- aGGcGUCCagcagGCCGCGGCgGCUGUCg -3'
miRNA:   3'- gCCaCAGGagca-UGGUGUCG-CGACGG- -5'
6652 3' -57 NC_001847.1 + 21864 0.66 0.847959
Target:  5'- aGGUGgug-CGgggGCUGCGGCGCgcUGCCg -3'
miRNA:   3'- gCCACaggaGCa--UGGUGUCGCG--ACGG- -5'
6652 3' -57 NC_001847.1 + 21941 0.71 0.607357
Target:  5'- cCGGaGUCCgagcUCGUcguccgggcgcuggGCCGCGGCGCcgguUGCCg -3'
miRNA:   3'- -GCCaCAGG----AGCA--------------UGGUGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 22041 0.67 0.83172
Target:  5'- ---aGUCUUCGcUGCUGgAGuCGCUGCCg -3'
miRNA:   3'- gccaCAGGAGC-AUGGUgUC-GCGACGG- -5'
6652 3' -57 NC_001847.1 + 26636 0.67 0.806033
Target:  5'- ---aGcCCUCGUGCUccaAGCGCUGCg -3'
miRNA:   3'- gccaCaGGAGCAUGGug-UCGCGACGg -5'
6652 3' -57 NC_001847.1 + 27309 0.71 0.590111
Target:  5'- gCGGUG-CCggcgggCGUGuCCACGGCaauCUGCCg -3'
miRNA:   3'- -GCCACaGGa-----GCAU-GGUGUCGc--GACGG- -5'
6652 3' -57 NC_001847.1 + 27433 0.67 0.814762
Target:  5'- uCGGUGUCgUUCGca--GCGGCGCggggGCCc -3'
miRNA:   3'- -GCCACAG-GAGCauggUGUCGCGa---CGG- -5'
6652 3' -57 NC_001847.1 + 28102 0.66 0.847958
Target:  5'- gCGGUGcCCUCGggGCCAggaccgaggcCGGCGaCguuggGCCc -3'
miRNA:   3'- -GCCACaGGAGCa-UGGU----------GUCGC-Ga----CGG- -5'
6652 3' -57 NC_001847.1 + 28307 0.71 0.55891
Target:  5'- gGGUGUguuaggccccgacCCUgCGUGCCgcucgccggcggGCAGCGCgGCCg -3'
miRNA:   3'- gCCACA-------------GGA-GCAUGG------------UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 29213 0.74 0.418302
Target:  5'- cCGGUGcUCUCGgccgcggcggGCCGCGGC-CUGCCg -3'
miRNA:   3'- -GCCACaGGAGCa---------UGGUGUCGcGACGG- -5'
6652 3' -57 NC_001847.1 + 29462 0.67 0.806033
Target:  5'- gCGGcgGcCCgcgCGUcgGCCugGGCGCUGgCg -3'
miRNA:   3'- -GCCa-CaGGa--GCA--UGGugUCGCGACgG- -5'
6652 3' -57 NC_001847.1 + 30586 0.66 0.844771
Target:  5'- gCGGUGgaguaCCUCugcgcgcggcugGCCGCGGCGCgGCg -3'
miRNA:   3'- -GCCACa----GGAGca----------UGGUGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 30699 0.78 0.26133
Target:  5'- -cGUGUaCCUgCGcGCCGCGGUGCUGCCg -3'
miRNA:   3'- gcCACA-GGA-GCaUGGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 30925 0.72 0.507737
Target:  5'- gCGGUG-CC-CGUGCCccgcgcgaguaccgGCAGCGCgugcUGCCg -3'
miRNA:   3'- -GCCACaGGaGCAUGG--------------UGUCGCG----ACGG- -5'
6652 3' -57 NC_001847.1 + 31161 0.7 0.661295
Target:  5'- gCGGUGgCCUucUGcGCgGCcGCGCUGCCg -3'
miRNA:   3'- -GCCACaGGA--GCaUGgUGuCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 31289 0.66 0.870847
Target:  5'- gCGGgagaCgCUCGUGCUgcuGCGGCGC-GCCg -3'
miRNA:   3'- -GCCaca-G-GAGCAUGG---UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 31516 0.7 0.630767
Target:  5'- ---cGUCCUCGU-CCGCGGCGUcGUCc -3'
miRNA:   3'- gccaCAGGAGCAuGGUGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 35930 0.69 0.690609
Target:  5'- cCGGcgGUCgcgcgcgCUUGcGCCugGGCGCUGCUg -3'
miRNA:   3'- -GCCa-CAG-------GAGCaUGGugUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 36117 0.68 0.731308
Target:  5'- gCGGgcgGUgCUCGccGCCcgagGCAGCGCUGUg -3'
miRNA:   3'- -GCCa--CAgGAGCa-UGG----UGUCGCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.