miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 3' -57 NC_001847.1 + 85556 0.67 0.83172
Target:  5'- gCGGcaaaUGUCCUCG-GCCgucgucucaACGGCGCcGUCg -3'
miRNA:   3'- -GCC----ACAGGAGCaUGG---------UGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 80320 0.67 0.797148
Target:  5'- gCGGuUGUCCaccacCGUGCC-C-GCGCUcGCCa -3'
miRNA:   3'- -GCC-ACAGGa----GCAUGGuGuCGCGA-CGG- -5'
6652 3' -57 NC_001847.1 + 53432 0.67 0.814762
Target:  5'- uGGcGUCggcgcgcgCGUGCCGCAGCGC-GCg -3'
miRNA:   3'- gCCaCAGga------GCAUGGUGUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 99506 0.67 0.797148
Target:  5'- gCGGcgcgGUCCagCGcugGCCcCAGCGCcGCCg -3'
miRNA:   3'- -GCCa---CAGGa-GCa--UGGuGUCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 129446 0.67 0.823327
Target:  5'- gGGUGUCCaagCGgcUACUugAGCugGCgGCCg -3'
miRNA:   3'- gCCACAGGa--GC--AUGGugUCG--CGaCGG- -5'
6652 3' -57 NC_001847.1 + 102836 0.67 0.806033
Target:  5'- gCGG-GUCC-CGUuCCGCGGCgGCgucgcgggGCCg -3'
miRNA:   3'- -GCCaCAGGaGCAuGGUGUCG-CGa-------CGG- -5'
6652 3' -57 NC_001847.1 + 132275 0.67 0.806033
Target:  5'- gCGGcgGcCCgcgCGUcgGCCugGGCGCUGgCg -3'
miRNA:   3'- -GCCa-CaGGa--GCA--UGGugUCGCGACgG- -5'
6652 3' -57 NC_001847.1 + 26636 0.67 0.806033
Target:  5'- ---aGcCCUCGUGCUccaAGCGCUGCg -3'
miRNA:   3'- gccaCaGGAGCAUGGug-UCGCGACGg -5'
6652 3' -57 NC_001847.1 + 5872 0.67 0.806033
Target:  5'- aGGUgGUCCagCGcUGCgCGCAGgGCgGCCg -3'
miRNA:   3'- gCCA-CAGGa-GC-AUG-GUGUCgCGaCGG- -5'
6652 3' -57 NC_001847.1 + 105600 0.67 0.797148
Target:  5'- cCGGcGgCCUCcaggGCCGCgAGCGCgGCCg -3'
miRNA:   3'- -GCCaCaGGAGca--UGGUG-UCGCGaCGG- -5'
6652 3' -57 NC_001847.1 + 100757 0.67 0.797148
Target:  5'- cCGGgGUCCagGUcgccccgcGCCAUGGCGCUcGCUg -3'
miRNA:   3'- -GCCaCAGGagCA--------UGGUGUCGCGA-CGG- -5'
6652 3' -57 NC_001847.1 + 86127 0.67 0.797148
Target:  5'- gCGGc-UCCgCGa--CGCGGCGCUGCCg -3'
miRNA:   3'- -GCCacAGGaGCaugGUGUCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 100543 0.67 0.793552
Target:  5'- gGGUGggcggggagccggCCgcggCGauuauUGCCGCcaGGCGCUGCCg -3'
miRNA:   3'- gCCACa------------GGa---GC-----AUGGUG--UCGCGACGG- -5'
6652 3' -57 NC_001847.1 + 29462 0.67 0.806033
Target:  5'- gCGGcgGcCCgcgCGUcgGCCugGGCGCUGgCg -3'
miRNA:   3'- -GCCa-CaGGa--GCA--UGGugUCGCGACgG- -5'
6652 3' -57 NC_001847.1 + 105833 0.67 0.806033
Target:  5'- gCGGcucgcuUGUCCgCG-GCCGCGGCcuCUGCCg -3'
miRNA:   3'- -GCC------ACAGGaGCaUGGUGUCGc-GACGG- -5'
6652 3' -57 NC_001847.1 + 22041 0.67 0.83172
Target:  5'- ---aGUCUUCGcUGCUGgAGuCGCUGCCg -3'
miRNA:   3'- gccaCAGGAGC-AUGGUgUC-GCGACGG- -5'
6652 3' -57 NC_001847.1 + 55381 0.67 0.823327
Target:  5'- uGGU-UUCUgGUGCCGCugaucgcgcuGGCGCUcGCCa -3'
miRNA:   3'- gCCAcAGGAgCAUGGUG----------UCGCGA-CGG- -5'
6652 3' -57 NC_001847.1 + 43444 0.67 0.797148
Target:  5'- gCGGUGcCCgagagcgaagCGggaGCCGCAGCcGCaGCCg -3'
miRNA:   3'- -GCCACaGGa---------GCa--UGGUGUCG-CGaCGG- -5'
6652 3' -57 NC_001847.1 + 86928 0.67 0.814762
Target:  5'- uGGUGgcggcgcugcgcUCCUCGgcccugGCCGcCGGCGCgGCa -3'
miRNA:   3'- gCCAC------------AGGAGCa-----UGGU-GUCGCGaCGg -5'
6652 3' -57 NC_001847.1 + 1953 0.67 0.788115
Target:  5'- cCGGcgcucGUCCUC--GCCggGCGGCGCcGCCa -3'
miRNA:   3'- -GCCa----CAGGAGcaUGG--UGUCGCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.