miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 104326 0.66 0.735268
Target:  5'- aGCCGCgcguaGGcGGCCucGGcgC-GCGCGAa -3'
miRNA:   3'- -CGGCGag---CC-CCGGu-UCuaGuCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 1513 0.66 0.735268
Target:  5'- aGCCGCgcguaGGcGGCCucGGcgC-GCGCGAa -3'
miRNA:   3'- -CGGCGag---CC-CCGGu-UCuaGuCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 102304 0.66 0.735268
Target:  5'- cGCCGCggucUCGGcGGCCAcgcGGGccUC-GCGCGc -3'
miRNA:   3'- -CGGCG----AGCC-CCGGU---UCU--AGuCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 87351 0.66 0.735268
Target:  5'- aGCCGaucgCGGGcGCCGAGGcCGacGCGUGGc -3'
miRNA:   3'- -CGGCga--GCCC-CGGUUCUaGU--CGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 41634 0.66 0.735268
Target:  5'- gGCCGCgagCGGcGcGCCGGGG--GGcCGCGAg -3'
miRNA:   3'- -CGGCGa--GCC-C-CGGUUCUagUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 78058 0.66 0.735268
Target:  5'- cGCCcCUCGcGGCCAcGA-CGGCGCa- -3'
miRNA:   3'- -CGGcGAGCcCCGGUuCUaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 38977 0.66 0.73238
Target:  5'- gGCCGCggCGGGGCUuaguAGAcgauguggacguucUCGuCGCGGa -3'
miRNA:   3'- -CGGCGa-GCCCCGGu---UCU--------------AGUcGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 53827 0.66 0.725612
Target:  5'- cGCCGgagCGGGGgCGcugaAGAgcCGGCGCGGg -3'
miRNA:   3'- -CGGCga-GCCCCgGU----UCUa-GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 102550 0.66 0.725612
Target:  5'- gGCCGCgaCGGcGGCCGcGAcuaGGCGCa- -3'
miRNA:   3'- -CGGCGa-GCC-CCGGUuCUag-UCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 31087 0.66 0.725612
Target:  5'- nGCCGCUgCGGccgguguaccuGGCCugcGggCGGCGCGc -3'
miRNA:   3'- -CGGCGA-GCC-----------CCGGuu-CuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 34085 0.66 0.725612
Target:  5'- gGCgGCccCGGGGCCGGccUCGGCGgGu -3'
miRNA:   3'- -CGgCGa-GCCCCGGUUcuAGUCGCgCu -5'
6653 3' -59.7 NC_001847.1 + 15373 0.66 0.725612
Target:  5'- gGCCaGCcuUCGGGGC---GGUCGGCGuCGGg -3'
miRNA:   3'- -CGG-CG--AGCCCCGguuCUAGUCGC-GCU- -5'
6653 3' -59.7 NC_001847.1 + 3038 0.66 0.725612
Target:  5'- aGCaGCUCGGcGGCCcGGAgCAcGCGCu- -3'
miRNA:   3'- -CGgCGAGCC-CCGGuUCUaGU-CGCGcu -5'
6653 3' -59.7 NC_001847.1 + 30466 0.66 0.725612
Target:  5'- gGCCGCUuucugcagcgCuGGGaCGcGAUCGGCGCGGc -3'
miRNA:   3'- -CGGCGA----------GcCCCgGUuCUAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 75140 0.66 0.725612
Target:  5'- cCCGC-CGGGGCCGg---CGGUGCu- -3'
miRNA:   3'- cGGCGaGCCCCGGUucuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 133900 0.66 0.725612
Target:  5'- nGCCGCUgCGGccgguguaccuGGCCugcGggCGGCGCGc -3'
miRNA:   3'- -CGGCGA-GCC-----------CCGGuu-CuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 105851 0.66 0.725612
Target:  5'- aGCaGCUCGGcGGCCcGGAgCAcGCGCu- -3'
miRNA:   3'- -CGgCGAGCC-CCGGuUCUaGU-CGCGcu -5'
6653 3' -59.7 NC_001847.1 + 121476 0.66 0.725612
Target:  5'- cGCgGCUCGuGGuuccacaccgcGCCgGAGAacCAGCGCGAg -3'
miRNA:   3'- -CGgCGAGC-CC-----------CGG-UUCUa-GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 17565 0.66 0.725612
Target:  5'- aGCCGUUCuGGGCUAcGAaCAGCaGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUuCUaGUCG-CGcu -5'
6653 3' -59.7 NC_001847.1 + 46966 0.66 0.7227
Target:  5'- cCCGCgcccGGGCCAAGcgCAGCaggcaggugaauacGCGAa -3'
miRNA:   3'- cGGCGagc-CCCGGUUCuaGUCG--------------CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.