miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6654 3' -61.1 NC_001847.1 + 14395 0.66 0.639521
Target:  5'- uCGCCGAGC-UGGCGuCGaGGccccGCUcGCAGc -3'
miRNA:   3'- -GCGGUUCGaACCGC-GC-CC----CGA-CGUCa -5'
6654 3' -61.1 NC_001847.1 + 86987 0.66 0.639521
Target:  5'- gGCCGGGCc-GGCGCGcgccGGCccgGCGGUu -3'
miRNA:   3'- gCGGUUCGaaCCGCGCc---CCGa--CGUCA- -5'
6654 3' -61.1 NC_001847.1 + 65112 0.66 0.639521
Target:  5'- aGCCGcGGCUcggcUGGCgGUGGGGCU-CGGc -3'
miRNA:   3'- gCGGU-UCGA----ACCG-CGCCCCGAcGUCa -5'
6654 3' -61.1 NC_001847.1 + 69681 0.66 0.639521
Target:  5'- gGC--AGCguugGGCGCGGGGCcgGCGc- -3'
miRNA:   3'- gCGguUCGaa--CCGCGCCCCGa-CGUca -5'
6654 3' -61.1 NC_001847.1 + 31806 0.66 0.639521
Target:  5'- gGCCGuGGCggugggcGGCGCGGGG--GCAGa -3'
miRNA:   3'- gCGGU-UCGaa-----CCGCGCCCCgaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 85846 0.66 0.639521
Target:  5'- gCGUCGAGCgcgucgcUGGCGCGGauguuauacGGC-GCGGa -3'
miRNA:   3'- -GCGGUUCGa------ACCGCGCC---------CCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 73857 0.66 0.639521
Target:  5'- aCGCCGccGCgguGCGCGGGGCgcguCAGUu -3'
miRNA:   3'- -GCGGUu-CGaacCGCGCCCCGac--GUCA- -5'
6654 3' -61.1 NC_001847.1 + 14987 0.66 0.639521
Target:  5'- uGCgCAAGCUUGGCaaGCGccccucGGCcGCGGUg -3'
miRNA:   3'- gCG-GUUCGAACCG--CGCc-----CCGaCGUCA- -5'
6654 3' -61.1 NC_001847.1 + 85783 0.66 0.633452
Target:  5'- gGCCGAuGCggugcgcgucgagGGUGCGGGcGCgUGCAGc -3'
miRNA:   3'- gCGGUU-CGaa-----------CCGCGCCC-CG-ACGUCa -5'
6654 3' -61.1 NC_001847.1 + 104879 0.66 0.629406
Target:  5'- cCGCCGcAGCggUGGCggcgagcgccccGCGGGGCccgcGCGGc -3'
miRNA:   3'- -GCGGU-UCGa-ACCG------------CGCCCCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 119540 0.66 0.629406
Target:  5'- cCGgCAGGCUgGGCaaGGGGCgcGCGGc -3'
miRNA:   3'- -GCgGUUCGAaCCGcgCCCCGa-CGUCa -5'
6654 3' -61.1 NC_001847.1 + 2066 0.66 0.629406
Target:  5'- cCGCCGcAGCggUGGCggcgagcgccccGCGGGGCccgcGCGGc -3'
miRNA:   3'- -GCGGU-UCGa-ACCG------------CGCCCCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 89989 0.66 0.629406
Target:  5'- uGCUgcGCgc--CGCGGGGCUGCAc- -3'
miRNA:   3'- gCGGuuCGaaccGCGCCCCGACGUca -5'
6654 3' -61.1 NC_001847.1 + 19613 0.66 0.629406
Target:  5'- gGcCCGAGCUcgGGCcCGGGGCgccgGCGu- -3'
miRNA:   3'- gC-GGUUCGAa-CCGcGCCCCGa---CGUca -5'
6654 3' -61.1 NC_001847.1 + 64458 0.66 0.629406
Target:  5'- cCGCCGcccGCggcGGCGCGGGGggccgaaGCAGg -3'
miRNA:   3'- -GCGGUu--CGaa-CCGCGCCCCga-----CGUCa -5'
6654 3' -61.1 NC_001847.1 + 82897 0.66 0.629406
Target:  5'- aGCCAAGCcgcGGCGCGcGGCgccCGGg -3'
miRNA:   3'- gCGGUUCGaa-CCGCGCcCCGac-GUCa -5'
6654 3' -61.1 NC_001847.1 + 89346 0.66 0.629406
Target:  5'- cCGCCGGGCUUuGCGCGcuucGGaGCUGUg-- -3'
miRNA:   3'- -GCGGUUCGAAcCGCGC----CC-CGACGuca -5'
6654 3' -61.1 NC_001847.1 + 101955 0.66 0.629406
Target:  5'- cCGCCAAGUcgGGCGCagagccGGccagccGCUGCAGc -3'
miRNA:   3'- -GCGGUUCGaaCCGCG------CCc-----CGACGUCa -5'
6654 3' -61.1 NC_001847.1 + 54524 0.66 0.619293
Target:  5'- uCGCCAucGGCaaccgcGGCG-GGGGCggggGCGGg -3'
miRNA:   3'- -GCGGU--UCGaa----CCGCgCCCCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 83937 0.66 0.619293
Target:  5'- gGCCc-GCUcgaagUGcGCGCGGGGCcggggGCGGa -3'
miRNA:   3'- gCGGuuCGA-----AC-CGCGCCCCGa----CGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.