Results 1 - 20 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6654 | 3' | -61.1 | NC_001847.1 | + | 99595 | 1.07 | 0.001026 |
Target: 5'- aCGCCAAGCUUGGCGCGGGGCUGCAGUc -3' miRNA: 3'- -GCGGUUCGAACCGCGCCCCGACGUCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 35558 | 0.8 | 0.088364 |
Target: 5'- gCGCCAAGCUUGGCgugcgcgcuuuggaGCGGcgccggcgcaaGGCUGCGGUa -3' miRNA: 3'- -GCGGUUCGAACCG--------------CGCC-----------CCGACGUCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 36868 | 0.77 | 0.14554 |
Target: 5'- gGCCGAGCUcuaCGCGGGGCUGCuGg -3' miRNA: 3'- gCGGUUCGAaccGCGCCCCGACGuCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 88239 | 0.76 | 0.16512 |
Target: 5'- aGCCGaggccGGCgcGGCGCGGGGCgccggGCGGg -3' miRNA: 3'- gCGGU-----UCGaaCCGCGCCCCGa----CGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 49377 | 0.76 | 0.1723 |
Target: 5'- uCGCCGgcacuaagacuaccGGCcugggUGGCGCGGGGCUGaCGGc -3' miRNA: 3'- -GCGGU--------------UCGa----ACCGCGCCCCGAC-GUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 108062 | 0.76 | 0.173595 |
Target: 5'- aCGCCuccAGCgugGGCGCggugccgcccggGGGGCUGCGGg -3' miRNA: 3'- -GCGGu--UCGaa-CCGCG------------CCCCGACGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 109363 | 0.75 | 0.177976 |
Target: 5'- gGCCGAGCacgcggaaugGGCGCagcuGGGCUGCGGUg -3' miRNA: 3'- gCGGUUCGaa--------CCGCGc---CCCGACGUCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 8112 | 0.75 | 0.196495 |
Target: 5'- gCGCC-AGCgcaGGCGCGGGGCcccagggGCGGg -3' miRNA: 3'- -GCGGuUCGaa-CCGCGCCCCGa------CGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 13299 | 0.74 | 0.206372 |
Target: 5'- gCGCUAcGCg-GGCGCcGGGCUGCAGUc -3' miRNA: 3'- -GCGGUuCGaaCCGCGcCCCGACGUCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 85654 | 0.74 | 0.21615 |
Target: 5'- gCGUCAGGUUUGGCGCGGccgugcuGGCgcGCAGg -3' miRNA: 3'- -GCGGUUCGAACCGCGCC-------CCGa-CGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 53078 | 0.74 | 0.216675 |
Target: 5'- aCGCCGAGCccGGCucagcguucgGCGGGGCgGCGGc -3' miRNA: 3'- -GCGGUUCGaaCCG----------CGCCCCGaCGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 36010 | 0.74 | 0.216675 |
Target: 5'- gGCCGcgGGCgUGGUGCuGGGGCUGCGc- -3' miRNA: 3'- gCGGU--UCGaACCGCG-CCCCGACGUca -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 73784 | 0.74 | 0.22199 |
Target: 5'- aCGCCucGCc-GGUGCGGGGCUGCcugccGGUg -3' miRNA: 3'- -GCGGuuCGaaCCGCGCCCCGACG-----UCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 132117 | 0.74 | 0.232953 |
Target: 5'- cCGCCGAGCUgcucGGCGCGGcccGCgacGCGGUg -3' miRNA: 3'- -GCGGUUCGAa---CCGCGCCc--CGa--CGUCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 132970 | 0.74 | 0.232953 |
Target: 5'- cCGcCCAGGC--GGCGCGGGcGCUGCGa- -3' miRNA: 3'- -GC-GGUUCGaaCCGCGCCC-CGACGUca -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 29304 | 0.74 | 0.232953 |
Target: 5'- cCGCCGAGCUgcucGGCGCGGcccGCgacGCGGUg -3' miRNA: 3'- -GCGGUUCGAa---CCGCGCCc--CGa--CGUCA- -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 74993 | 0.73 | 0.23633 |
Target: 5'- gCGCCAGGCUcaguccgccggcgGGCGgGGGGCcagcggGCAGa -3' miRNA: 3'- -GCGGUUCGAa------------CCGCgCCCCGa-----CGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 102670 | 0.73 | 0.238603 |
Target: 5'- gGCCGcgagGGCgggGGgGCGGGGCggggGCAGg -3' miRNA: 3'- gCGGU----UCGaa-CCgCGCCCCGa---CGUCa -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 87671 | 0.73 | 0.238603 |
Target: 5'- gCGCCGcauGGCccgGGCGCuGGGGCUGCu-- -3' miRNA: 3'- -GCGGU---UCGaa-CCGCG-CCCCGACGuca -5' |
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6654 | 3' | -61.1 | NC_001847.1 | + | 21839 | 0.73 | 0.250248 |
Target: 5'- cCGCCAAugcugcGCUcggugcagcaggUGGUGCGGGGgCUGCGGc -3' miRNA: 3'- -GCGGUU------CGA------------ACCGCGCCCC-GACGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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