miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6654 3' -61.1 NC_001847.1 + 54524 0.66 0.619293
Target:  5'- uCGCCAucGGCaaccgcGGCG-GGGGCggggGCGGg -3'
miRNA:   3'- -GCGGU--UCGaa----CCGCgCCCCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 16619 0.66 0.619293
Target:  5'- aCGCUGAGCaucGGCucguacGCGGGGUUGCu-- -3'
miRNA:   3'- -GCGGUUCGaa-CCG------CGCCCCGACGuca -5'
6654 3' -61.1 NC_001847.1 + 51832 0.66 0.619293
Target:  5'- gCGCCAAGCgcccccGuGCGCGGgucgaucaggaGGCcGCAGg -3'
miRNA:   3'- -GCGGUUCGaa----C-CGCGCC-----------CCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 1927 0.66 0.619293
Target:  5'- gGCgAGGCUUagccGGCGCGcGGC-GCAGa -3'
miRNA:   3'- gCGgUUCGAA----CCGCGCcCCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 16678 0.66 0.619293
Target:  5'- uCGCgCAGcCUUGGCuGCGcGGGCgagccgGCAGg -3'
miRNA:   3'- -GCG-GUUcGAACCG-CGC-CCCGa-----CGUCa -5'
6654 3' -61.1 NC_001847.1 + 35305 0.66 0.619293
Target:  5'- cCGCCGAGC--GGCGCGcgcuggaagcGGGCgUGCGc- -3'
miRNA:   3'- -GCGGUUCGaaCCGCGC----------CCCG-ACGUca -5'
6654 3' -61.1 NC_001847.1 + 13734 0.66 0.619293
Target:  5'- gGCCuucCUgGGCGUGGGGCUgaucgcGCAGc -3'
miRNA:   3'- gCGGuucGAaCCGCGCCCCGA------CGUCa -5'
6654 3' -61.1 NC_001847.1 + 83937 0.66 0.619293
Target:  5'- gGCCc-GCUcgaagUGcGCGCGGGGCcggggGCGGa -3'
miRNA:   3'- gCGGuuCGA-----AC-CGCGCCCCGa----CGUCa -5'
6654 3' -61.1 NC_001847.1 + 21945 0.66 0.619293
Target:  5'- aGuCCGAGCUcgucguccgGGCGCuGGGCcGCGGc -3'
miRNA:   3'- gC-GGUUCGAa--------CCGCGcCCCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 36934 0.66 0.609189
Target:  5'- gCGCUguGCUucucgcUGGCcgaGCGGGGgCUGCGGc -3'
miRNA:   3'- -GCGGuuCGA------ACCG---CGCCCC-GACGUCa -5'
6654 3' -61.1 NC_001847.1 + 42882 0.66 0.609189
Target:  5'- gCGCCAcGCUagugGGCGCcuuugcgacucGGGGCUGacgcuGGUg -3'
miRNA:   3'- -GCGGUuCGAa---CCGCG-----------CCCCGACg----UCA- -5'
6654 3' -61.1 NC_001847.1 + 119155 0.66 0.609189
Target:  5'- gCGCCGcGGCcgc-CGCGGGGCgGCGGg -3'
miRNA:   3'- -GCGGU-UCGaaccGCGCCCCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 131470 0.66 0.609189
Target:  5'- uGCCgGAGaugggGGaCGCGGGGaaGCAGUa -3'
miRNA:   3'- gCGG-UUCgaa--CC-GCGCCCCgaCGUCA- -5'
6654 3' -61.1 NC_001847.1 + 92268 0.66 0.609189
Target:  5'- gCGCCcacuAGCgUGGCGCGGuGC-GCGGc -3'
miRNA:   3'- -GCGGu---UCGaACCGCGCCcCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 69477 0.66 0.609189
Target:  5'- gGCC-AGCUgcgcgaUGGUGCGGGcGCgcacGCGGc -3'
miRNA:   3'- gCGGuUCGA------ACCGCGCCC-CGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 28657 0.66 0.609189
Target:  5'- uGCCgGAGaugggGGaCGCGGGGaaGCAGUa -3'
miRNA:   3'- gCGG-UUCgaa--CC-GCGCCCCgaCGUCA- -5'
6654 3' -61.1 NC_001847.1 + 56938 0.66 0.609189
Target:  5'- gGCCGAGUU---UGCGGcGCUGCAGUu -3'
miRNA:   3'- gCGGUUCGAaccGCGCCcCGACGUCA- -5'
6654 3' -61.1 NC_001847.1 + 14068 0.66 0.603135
Target:  5'- gGCCGGuGCUUGGgccgcucguggacauCGCGGaGGCgcugGCGGa -3'
miRNA:   3'- gCGGUU-CGAACC---------------GCGCC-CCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 101136 0.66 0.599103
Target:  5'- uGUgGAGaugGGCGCgGGGGCUGgGGc -3'
miRNA:   3'- gCGgUUCgaaCCGCG-CCCCGACgUCa -5'
6654 3' -61.1 NC_001847.1 + 53578 0.66 0.599103
Target:  5'- cCGCCGgccccgcgcAGCU--GCGCGGGGCcgGCGa- -3'
miRNA:   3'- -GCGGU---------UCGAacCGCGCCCCGa-CGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.