miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6654 3' -61.1 NC_001847.1 + 1052 0.66 0.599103
Target:  5'- uCGCCAgagcaAGCggcGGCGCcGGGCUGUu-- -3'
miRNA:   3'- -GCGGU-----UCGaa-CCGCGcCCCGACGuca -5'
6654 3' -61.1 NC_001847.1 + 1267 0.68 0.520772
Target:  5'- gCGCCGAGCccccagcgguuggcGGCGCGGuGGCUGg--- -3'
miRNA:   3'- -GCGGUUCGaa------------CCGCGCC-CCGACguca -5'
6654 3' -61.1 NC_001847.1 + 1927 0.66 0.619293
Target:  5'- gGCgAGGCUUagccGGCGCGcGGC-GCAGa -3'
miRNA:   3'- gCGgUUCGAA----CCGCGCcCCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 2066 0.66 0.629406
Target:  5'- cCGCCGcAGCggUGGCggcgagcgccccGCGGGGCccgcGCGGc -3'
miRNA:   3'- -GCGGU-UCGa-ACCG------------CGCCCCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 2152 0.68 0.519803
Target:  5'- gCGCCGGGCgccagGGCuCGGGGaagaGCGGg -3'
miRNA:   3'- -GCGGUUCGaa---CCGcGCCCCga--CGUCa -5'
6654 3' -61.1 NC_001847.1 + 2230 0.7 0.384691
Target:  5'- gCGCCGcGGCgcugGGCGCGGGcGUgugGUAGUc -3'
miRNA:   3'- -GCGGU-UCGaa--CCGCGCCC-CGa--CGUCA- -5'
6654 3' -61.1 NC_001847.1 + 2557 0.66 0.599103
Target:  5'- cCGgCGGGCUgucuucGGCGCGGGcGcCUGCGc- -3'
miRNA:   3'- -GCgGUUCGAa-----CCGCGCCC-C-GACGUca -5'
6654 3' -61.1 NC_001847.1 + 3305 0.67 0.53931
Target:  5'- uCGgCGAGCgcGGCGCGGGcgccGCUGCc-- -3'
miRNA:   3'- -GCgGUUCGaaCCGCGCCC----CGACGuca -5'
6654 3' -61.1 NC_001847.1 + 3848 0.66 0.589039
Target:  5'- gCGCCGccccagacguAGac-GGCGcCGGGGCUGCGc- -3'
miRNA:   3'- -GCGGU----------UCgaaCCGC-GCCCCGACGUca -5'
6654 3' -61.1 NC_001847.1 + 4012 0.66 0.599103
Target:  5'- gCGCCGGGCccGGCgcccgccucucGCGGGGCcGCuuuGGUu -3'
miRNA:   3'- -GCGGUUCGaaCCG-----------CGCCCCGaCG---UCA- -5'
6654 3' -61.1 NC_001847.1 + 4970 0.69 0.435135
Target:  5'- gCGCCGggggggcAGCUggGGUGCGGcGGCcGCGGc -3'
miRNA:   3'- -GCGGU-------UCGAa-CCGCGCC-CCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 5809 0.7 0.384691
Target:  5'- gCGCUugcGCUUGGCGCGccGGGUgcgUGCAGc -3'
miRNA:   3'- -GCGGuu-CGAACCGCGC--CCCG---ACGUCa -5'
6654 3' -61.1 NC_001847.1 + 6944 0.69 0.436022
Target:  5'- aCGaagaCGGGCcaGGCGCGGGGUcGCGGc -3'
miRNA:   3'- -GCg---GUUCGaaCCGCGCCCCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 7730 0.7 0.368492
Target:  5'- gCGCaGGGCgcgGGCGCGGaGGCgGCGGc -3'
miRNA:   3'- -GCGgUUCGaa-CCGCGCC-CCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 7881 0.67 0.53931
Target:  5'- cCGCCAcaaaaccaccuAGCc--GCGCGGGGCgcgcgGCGGc -3'
miRNA:   3'- -GCGGU-----------UCGaacCGCGCCCCGa----CGUCa -5'
6654 3' -61.1 NC_001847.1 + 8112 0.75 0.196495
Target:  5'- gCGCC-AGCgcaGGCGCGGGGCcccagggGCGGg -3'
miRNA:   3'- -GCGGuUCGaa-CCGCGCCCCGa------CGUCa -5'
6654 3' -61.1 NC_001847.1 + 8128 0.68 0.500579
Target:  5'- cCGCgGGGCgggcgGGCcgacgagccucGCGGGGCUGCu-- -3'
miRNA:   3'- -GCGgUUCGaa---CCG-----------CGCCCCGACGuca -5'
6654 3' -61.1 NC_001847.1 + 10729 0.67 0.55906
Target:  5'- cCGCCAgcgAGUUuaggGGgGCGGGGCcccGCGGc -3'
miRNA:   3'- -GCGGU---UCGAa---CCgCGCCCCGa--CGUCa -5'
6654 3' -61.1 NC_001847.1 + 10859 0.71 0.352768
Target:  5'- gGCCgAGGCgcggcgGGCGCGGGcGCccagGCAGa -3'
miRNA:   3'- gCGG-UUCGaa----CCGCGCCC-CGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 12358 0.68 0.500579
Target:  5'- gGCCuGGCUcggGaGCGuCGGcGGCUGCGGc -3'
miRNA:   3'- gCGGuUCGAa--C-CGC-GCC-CCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.