miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6654 3' -61.1 NC_001847.1 + 97820 0.72 0.308493
Target:  5'- aCGCCAGcGCUgugcucGGCGCGcgcGGGCUGCGc- -3'
miRNA:   3'- -GCGGUU-CGAa-----CCGCGC---CCCGACGUca -5'
6654 3' -61.1 NC_001847.1 + 21839 0.73 0.250248
Target:  5'- cCGCCAAugcugcGCUcggugcagcaggUGGUGCGGGGgCUGCGGc -3'
miRNA:   3'- -GCGGUU------CGA------------ACCGCGCCCC-GACGUCa -5'
6654 3' -61.1 NC_001847.1 + 31292 0.72 0.274938
Target:  5'- cCGaCCAGGCg-GGCGCGGGGa-GCGGg -3'
miRNA:   3'- -GC-GGUUCGaaCCGCGCCCCgaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 30416 0.72 0.287333
Target:  5'- cCGCCGgcaAGCUcgUGGCGggcgcggaggcgcCGGGGCUGCAc- -3'
miRNA:   3'- -GCGGU---UCGA--ACCGC-------------GCCCCGACGUca -5'
6654 3' -61.1 NC_001847.1 + 56083 0.72 0.287998
Target:  5'- gGCUGAGCgcgcccggGGUGCGGGGCUGgCAc- -3'
miRNA:   3'- gCGGUUCGaa------CCGCGCCCCGAC-GUca -5'
6654 3' -61.1 NC_001847.1 + 34758 0.72 0.287998
Target:  5'- gGCCGAGC-UGGCGCGGcugcgcgccgcGGCcGCGGc -3'
miRNA:   3'- gCGGUUCGaACCGCGCC-----------CCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 53219 0.72 0.30154
Target:  5'- cCGUCAAGCUgaacgcccucaUGGUGCGcuGGCUGCGGc -3'
miRNA:   3'- -GCGGUUCGA-----------ACCGCGCc-CCGACGUCa -5'
6654 3' -61.1 NC_001847.1 + 135029 0.72 0.305697
Target:  5'- gGCgGGGCcggGGCGCGGGGCgccggacccagggGCGGa -3'
miRNA:   3'- gCGgUUCGaa-CCGCGCCCCGa------------CGUCa -5'
6654 3' -61.1 NC_001847.1 + 90170 0.72 0.308493
Target:  5'- gGCCAAGCgcaGCcuuGCGGGGCUGCu-- -3'
miRNA:   3'- gCGGUUCGaacCG---CGCCCCGACGuca -5'
6654 3' -61.1 NC_001847.1 + 87671 0.73 0.238603
Target:  5'- gCGCCGcauGGCccgGGCGCuGGGGCUGCu-- -3'
miRNA:   3'- -GCGGU---UCGaa-CCGCG-CCCCGACGuca -5'
6654 3' -61.1 NC_001847.1 + 102670 0.73 0.238603
Target:  5'- gGCCGcgagGGCgggGGgGCGGGGCggggGCAGg -3'
miRNA:   3'- gCGGU----UCGaa-CCgCGCCCCGa---CGUCa -5'
6654 3' -61.1 NC_001847.1 + 74993 0.73 0.23633
Target:  5'- gCGCCAGGCUcaguccgccggcgGGCGgGGGGCcagcggGCAGa -3'
miRNA:   3'- -GCGGUUCGAa------------CCGCgCCCCGa-----CGUCa -5'
6654 3' -61.1 NC_001847.1 + 36868 0.77 0.14554
Target:  5'- gGCCGAGCUcuaCGCGGGGCUGCuGg -3'
miRNA:   3'- gCGGUUCGAaccGCGCCCCGACGuCa -5'
6654 3' -61.1 NC_001847.1 + 49377 0.76 0.1723
Target:  5'- uCGCCGgcacuaagacuaccGGCcugggUGGCGCGGGGCUGaCGGc -3'
miRNA:   3'- -GCGGU--------------UCGa----ACCGCGCCCCGAC-GUCa -5'
6654 3' -61.1 NC_001847.1 + 8112 0.75 0.196495
Target:  5'- gCGCC-AGCgcaGGCGCGGGGCcccagggGCGGg -3'
miRNA:   3'- -GCGGuUCGaa-CCGCGCCCCGa------CGUCa -5'
6654 3' -61.1 NC_001847.1 + 13299 0.74 0.206372
Target:  5'- gCGCUAcGCg-GGCGCcGGGCUGCAGUc -3'
miRNA:   3'- -GCGGUuCGaaCCGCGcCCCGACGUCA- -5'
6654 3' -61.1 NC_001847.1 + 36010 0.74 0.216675
Target:  5'- gGCCGcgGGCgUGGUGCuGGGGCUGCGc- -3'
miRNA:   3'- gCGGU--UCGaACCGCG-CCCCGACGUca -5'
6654 3' -61.1 NC_001847.1 + 53078 0.74 0.216675
Target:  5'- aCGCCGAGCccGGCucagcguucgGCGGGGCgGCGGc -3'
miRNA:   3'- -GCGGUUCGaaCCG----------CGCCCCGaCGUCa -5'
6654 3' -61.1 NC_001847.1 + 73784 0.74 0.22199
Target:  5'- aCGCCucGCc-GGUGCGGGGCUGCcugccGGUg -3'
miRNA:   3'- -GCGGuuCGaaCCGCGCCCCGACG-----UCA- -5'
6654 3' -61.1 NC_001847.1 + 132117 0.74 0.232953
Target:  5'- cCGCCGAGCUgcucGGCGCGGcccGCgacGCGGUg -3'
miRNA:   3'- -GCGGUUCGAa---CCGCGCCc--CGa--CGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.