miRNA display CGI


Results 1 - 20 of 1162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6654 5' -55.9 NC_001847.1 + 89672 0.66 0.88849
Target:  5'- -----cCGAGCacgcgcgaCUGGCGCGCgcuauuugcgcGCGCCg -3'
miRNA:   3'- uuuuauGUUCGg-------GGCCGCGCG-----------UGCGG- -5'
6654 5' -55.9 NC_001847.1 + 4432 0.66 0.88849
Target:  5'- ----cGCGcGCCgCaGGgaaaCGCGCACGCCg -3'
miRNA:   3'- uuuuaUGUuCGGgG-CC----GCGCGUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 44536 0.66 0.88849
Target:  5'- ----cGCGAGCUCgCGGUGCcGCuuauccgaacgACGCCc -3'
miRNA:   3'- uuuuaUGUUCGGG-GCCGCG-CG-----------UGCGG- -5'
6654 5' -55.9 NC_001847.1 + 42388 0.66 0.88849
Target:  5'- ----gAUGAGCUCgCGGagccgcauguuCGCGCGCGCUg -3'
miRNA:   3'- uuuuaUGUUCGGG-GCC-----------GCGCGUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 64856 0.66 0.88849
Target:  5'- ---cUGCAGGa-CUGGUacuuucgcagGCGCGCGCCg -3'
miRNA:   3'- uuuuAUGUUCggGGCCG----------CGCGUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 41165 0.66 0.88849
Target:  5'- ------uGAGCgCgCGGCGCGgGCGCg -3'
miRNA:   3'- uuuuaugUUCGgG-GCCGCGCgUGCGg -5'
6654 5' -55.9 NC_001847.1 + 34518 0.66 0.88849
Target:  5'- ----cGCGgacGGCgCCGGCGaUGCGcCGCCc -3'
miRNA:   3'- uuuuaUGU---UCGgGGCCGC-GCGU-GCGG- -5'
6654 5' -55.9 NC_001847.1 + 18520 0.66 0.88849
Target:  5'- ----gGCcAGCgCUgcgGGCGCGC-CGCCg -3'
miRNA:   3'- uuuuaUGuUCGgGG---CCGCGCGuGCGG- -5'
6654 5' -55.9 NC_001847.1 + 67917 0.66 0.88849
Target:  5'- ----aAC-AGCUCaCGGCGUucgaccGCGCGCCc -3'
miRNA:   3'- uuuuaUGuUCGGG-GCCGCG------CGUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 120534 0.66 0.88849
Target:  5'- -cAGUACGAGCCgaUGaC-CGCGCGCCa -3'
miRNA:   3'- uuUUAUGUUCGGg-GCcGcGCGUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 103017 0.66 0.88849
Target:  5'- ----gGCGGcGCCCagcgccggCGGCGgGCGgGCCg -3'
miRNA:   3'- uuuuaUGUU-CGGG--------GCCGCgCGUgCGG- -5'
6654 5' -55.9 NC_001847.1 + 2587 0.66 0.88849
Target:  5'- ----cGCGGccGCCgCGGC-CGCACGCg -3'
miRNA:   3'- uuuuaUGUU--CGGgGCCGcGCGUGCGg -5'
6654 5' -55.9 NC_001847.1 + 33894 0.66 0.88849
Target:  5'- ----cGCGcguGGCCgCgGGCGUGCAggacCGCCu -3'
miRNA:   3'- uuuuaUGU---UCGG-GgCCGCGCGU----GCGG- -5'
6654 5' -55.9 NC_001847.1 + 103772 0.66 0.88849
Target:  5'- ---cUugGGuGCUCagGGCGCGCuCGCCg -3'
miRNA:   3'- uuuuAugUU-CGGGg-CCGCGCGuGCGG- -5'
6654 5' -55.9 NC_001847.1 + 38657 0.66 0.88849
Target:  5'- ----cGCGuuGCCgUGGCGaCGCcCGCCg -3'
miRNA:   3'- uuuuaUGUu-CGGgGCCGC-GCGuGCGG- -5'
6654 5' -55.9 NC_001847.1 + 23843 0.66 0.88849
Target:  5'- ----cGCAcGGCCCCGaGC-CGgCugGCCu -3'
miRNA:   3'- uuuuaUGU-UCGGGGC-CGcGC-GugCGG- -5'
6654 5' -55.9 NC_001847.1 + 85029 0.66 0.88849
Target:  5'- ------gAGGCCagCCGGCGCucUACGCCg -3'
miRNA:   3'- uuuuaugUUCGG--GGCCGCGc-GUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 51975 0.66 0.88849
Target:  5'- -uGAUGCAcuggguGCgCCGGCGCaucgcggaCGCGCCc -3'
miRNA:   3'- uuUUAUGUu-----CGgGGCCGCGc-------GUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 90846 0.66 0.88849
Target:  5'- ----cGCuGGCCCgCcGCGC-CGCGCCg -3'
miRNA:   3'- uuuuaUGuUCGGG-GcCGCGcGUGCGG- -5'
6654 5' -55.9 NC_001847.1 + 105729 0.66 0.88849
Target:  5'- ----aGCGGGgCCaCGGUccGCGC-CGCCa -3'
miRNA:   3'- uuuuaUGUUCgGG-GCCG--CGCGuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.