Results 1 - 20 of 1162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6654 | 5' | -55.9 | NC_001847.1 | + | 89672 | 0.66 | 0.88849 |
Target: 5'- -----cCGAGCacgcgcgaCUGGCGCGCgcuauuugcgcGCGCCg -3' miRNA: 3'- uuuuauGUUCGg-------GGCCGCGCG-----------UGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 4432 | 0.66 | 0.88849 |
Target: 5'- ----cGCGcGCCgCaGGgaaaCGCGCACGCCg -3' miRNA: 3'- uuuuaUGUuCGGgG-CC----GCGCGUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 44536 | 0.66 | 0.88849 |
Target: 5'- ----cGCGAGCUCgCGGUGCcGCuuauccgaacgACGCCc -3' miRNA: 3'- uuuuaUGUUCGGG-GCCGCG-CG-----------UGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 42388 | 0.66 | 0.88849 |
Target: 5'- ----gAUGAGCUCgCGGagccgcauguuCGCGCGCGCUg -3' miRNA: 3'- uuuuaUGUUCGGG-GCC-----------GCGCGUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 64856 | 0.66 | 0.88849 |
Target: 5'- ---cUGCAGGa-CUGGUacuuucgcagGCGCGCGCCg -3' miRNA: 3'- uuuuAUGUUCggGGCCG----------CGCGUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 41165 | 0.66 | 0.88849 |
Target: 5'- ------uGAGCgCgCGGCGCGgGCGCg -3' miRNA: 3'- uuuuaugUUCGgG-GCCGCGCgUGCGg -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 34518 | 0.66 | 0.88849 |
Target: 5'- ----cGCGgacGGCgCCGGCGaUGCGcCGCCc -3' miRNA: 3'- uuuuaUGU---UCGgGGCCGC-GCGU-GCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 18520 | 0.66 | 0.88849 |
Target: 5'- ----gGCcAGCgCUgcgGGCGCGC-CGCCg -3' miRNA: 3'- uuuuaUGuUCGgGG---CCGCGCGuGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 67917 | 0.66 | 0.88849 |
Target: 5'- ----aAC-AGCUCaCGGCGUucgaccGCGCGCCc -3' miRNA: 3'- uuuuaUGuUCGGG-GCCGCG------CGUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 120534 | 0.66 | 0.88849 |
Target: 5'- -cAGUACGAGCCgaUGaC-CGCGCGCCa -3' miRNA: 3'- uuUUAUGUUCGGg-GCcGcGCGUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 103017 | 0.66 | 0.88849 |
Target: 5'- ----gGCGGcGCCCagcgccggCGGCGgGCGgGCCg -3' miRNA: 3'- uuuuaUGUU-CGGG--------GCCGCgCGUgCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 2587 | 0.66 | 0.88849 |
Target: 5'- ----cGCGGccGCCgCGGC-CGCACGCg -3' miRNA: 3'- uuuuaUGUU--CGGgGCCGcGCGUGCGg -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 33894 | 0.66 | 0.88849 |
Target: 5'- ----cGCGcguGGCCgCgGGCGUGCAggacCGCCu -3' miRNA: 3'- uuuuaUGU---UCGG-GgCCGCGCGU----GCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 103772 | 0.66 | 0.88849 |
Target: 5'- ---cUugGGuGCUCagGGCGCGCuCGCCg -3' miRNA: 3'- uuuuAugUU-CGGGg-CCGCGCGuGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 38657 | 0.66 | 0.88849 |
Target: 5'- ----cGCGuuGCCgUGGCGaCGCcCGCCg -3' miRNA: 3'- uuuuaUGUu-CGGgGCCGC-GCGuGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 23843 | 0.66 | 0.88849 |
Target: 5'- ----cGCAcGGCCCCGaGC-CGgCugGCCu -3' miRNA: 3'- uuuuaUGU-UCGGGGC-CGcGC-GugCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 85029 | 0.66 | 0.88849 |
Target: 5'- ------gAGGCCagCCGGCGCucUACGCCg -3' miRNA: 3'- uuuuaugUUCGG--GGCCGCGc-GUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 51975 | 0.66 | 0.88849 |
Target: 5'- -uGAUGCAcuggguGCgCCGGCGCaucgcggaCGCGCCc -3' miRNA: 3'- uuUUAUGUu-----CGgGGCCGCGc-------GUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 90846 | 0.66 | 0.88849 |
Target: 5'- ----cGCuGGCCCgCcGCGC-CGCGCCg -3' miRNA: 3'- uuuuaUGuUCGGG-GcCGCGcGUGCGG- -5' |
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6654 | 5' | -55.9 | NC_001847.1 | + | 105729 | 0.66 | 0.88849 |
Target: 5'- ----aGCGGGgCCaCGGUccGCGC-CGCCa -3' miRNA: 3'- uuuuaUGUUCgGG-GCCG--CGCGuGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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