miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6655 3' -57.6 NC_001847.1 + 80685 0.68 0.714343
Target:  5'- --gGCUGcGCgCCGGCGGCGGCUg-- -3'
miRNA:   3'- ccaCGACuCGgGGCUGCUGCUGAgaa -5'
6655 3' -57.6 NC_001847.1 + 33239 0.68 0.704371
Target:  5'- aGUGC--GGCUUCGACGACGACgggCUg -3'
miRNA:   3'- cCACGacUCGGGGCUGCUGCUGa--GAa -5'
6655 3' -57.6 NC_001847.1 + 59275 0.68 0.704371
Target:  5'- --gGCUcucGAGCCCCGGCGGCGGg---- -3'
miRNA:   3'- ccaCGA---CUCGGGGCUGCUGCUgagaa -5'
6655 3' -57.6 NC_001847.1 + 31965 0.68 0.694339
Target:  5'- cGGcgGCggcGGGCCCCGugGACGccgccCUCg- -3'
miRNA:   3'- -CCa-CGa--CUCGGGGCugCUGCu----GAGaa -5'
6655 3' -57.6 NC_001847.1 + 134029 0.68 0.684254
Target:  5'- uGGUGCUGgaGGCCgCGGCGGCGcCg--- -3'
miRNA:   3'- -CCACGAC--UCGGgGCUGCUGCuGagaa -5'
6655 3' -57.6 NC_001847.1 + 42333 0.68 0.684254
Target:  5'- cGUGCUGugggcGCCCguguggcgcggCGGCGACGuACUCUUc -3'
miRNA:   3'- cCACGACu----CGGG-----------GCUGCUGC-UGAGAA- -5'
6655 3' -57.6 NC_001847.1 + 31216 0.68 0.684254
Target:  5'- uGGUGCUGgaGGCCgCGGCGGCGcCg--- -3'
miRNA:   3'- -CCACGAC--UCGGgGCUGCUGCuGagaa -5'
6655 3' -57.6 NC_001847.1 + 74911 0.69 0.674127
Target:  5'- cGUGCU-AGCCcucgCCGACGACGACg--- -3'
miRNA:   3'- cCACGAcUCGG----GGCUGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 81439 0.69 0.674127
Target:  5'- --cGC-GAGCCgCCGGCGGCGcGCUCg- -3'
miRNA:   3'- ccaCGaCUCGG-GGCUGCUGC-UGAGaa -5'
6655 3' -57.6 NC_001847.1 + 62915 0.69 0.674127
Target:  5'- gGGUGCUcGGGgCCCG-CGgGCGGCUCc- -3'
miRNA:   3'- -CCACGA-CUCgGGGCuGC-UGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 107843 0.69 0.643574
Target:  5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 132730 0.69 0.643574
Target:  5'- --cGCggGGGCCCCucggggGAgGACGACUCUg -3'
miRNA:   3'- ccaCGa-CUCGGGG------CUgCUGCUGAGAa -5'
6655 3' -57.6 NC_001847.1 + 33437 0.69 0.643574
Target:  5'- --cGgaGGGCUCgGAgGACGACUCUUg -3'
miRNA:   3'- ccaCgaCUCGGGgCUgCUGCUGAGAA- -5'
6655 3' -57.6 NC_001847.1 + 5030 0.69 0.643574
Target:  5'- gGGgaaGCUcGGGCgaCCGGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CGA-CUCGg-GGCUGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 81031 0.69 0.643574
Target:  5'- cGGUGCUGcGCcuCCCGcGCGGCGAgcgcCUCUa -3'
miRNA:   3'- -CCACGACuCG--GGGC-UGCUGCU----GAGAa -5'
6655 3' -57.6 NC_001847.1 + 34186 0.69 0.623147
Target:  5'- cGGcGCcGAGCCCCGcuguuaccGCGGCGGCUa-- -3'
miRNA:   3'- -CCaCGaCUCGGGGC--------UGCUGCUGAgaa -5'
6655 3' -57.6 NC_001847.1 + 59556 0.7 0.599692
Target:  5'- uGGUGCUGGGCCUgGAgcacuuuuuuuugcCGGCG-CUCa- -3'
miRNA:   3'- -CCACGACUCGGGgCU--------------GCUGCuGAGaa -5'
6655 3' -57.6 NC_001847.1 + 54254 0.7 0.592575
Target:  5'- --cGCUGcgguGGCgCCCGACGAgCGGCUCg- -3'
miRNA:   3'- ccaCGAC----UCG-GGGCUGCU-GCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 94146 0.7 0.592575
Target:  5'- aGGUGCUGGGCgacauCUCG-CGGCGGCUgCUg -3'
miRNA:   3'- -CCACGACUCG-----GGGCuGCUGCUGA-GAa -5'
6655 3' -57.6 NC_001847.1 + 58282 0.7 0.572325
Target:  5'- uGUGCUcGGCCgCGGCGACGGCg--- -3'
miRNA:   3'- cCACGAcUCGGgGCUGCUGCUGagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.