Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6655 | 5' | -57.6 | NC_001847.1 | + | 105489 | 0.69 | 0.715878 |
Target: 5'- gCCucGGAccCGUCCUCCGGGUCCgcCCGc -3' miRNA: 3'- -GGu-UCUcaGCAGGAGGCUCGGGa-GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 2676 | 0.69 | 0.715878 |
Target: 5'- gCCucGGAccCGUCCUCCGGGUCCgcCCGc -3' miRNA: 3'- -GGu-UCUcaGCAGGAGGCUCGGGa-GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 59186 | 0.69 | 0.686297 |
Target: 5'- gUCGAGGGggcCGUCgUagcCCGAGCCgUCCGc -3' miRNA: 3'- -GGUUCUCa--GCAGgA---GGCUCGGgAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 59352 | 0.7 | 0.656326 |
Target: 5'- gCGAG-GUCGcgcgCCgcgCCGAGCCCgcggCCGu -3' miRNA: 3'- gGUUCuCAGCa---GGa--GGCUCGGGa---GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 92043 | 0.7 | 0.636238 |
Target: 5'- aCCGccGG-CG-CCUCCGGGCgCCUCCGc -3' miRNA: 3'- -GGUucUCaGCaGGAGGCUCG-GGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 39391 | 0.7 | 0.636238 |
Target: 5'- uCgGGGAGcCGgcgCCggCCGGGCuCCUCCGa -3' miRNA: 3'- -GgUUCUCaGCa--GGa-GGCUCG-GGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 10675 | 0.7 | 0.630207 |
Target: 5'- gCCGGGGGgcUCGcCCUCCGgucgcgcccgggcgcGGCCCgcgCCGg -3' miRNA: 3'- -GGUUCUC--AGCaGGAGGC---------------UCGGGa--GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 113488 | 0.7 | 0.630207 |
Target: 5'- gCCGGGGGgcUCGcCCUCCGgucgcgcccgggcgcGGCCCgcgCCGg -3' miRNA: 3'- -GGUUCUC--AGCaGGAGGC---------------UCGGGa--GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 29283 | 0.7 | 0.616138 |
Target: 5'- aCCcGGAGcgCGUgCUCCGGGCCg-CCGa -3' miRNA: 3'- -GGuUCUCa-GCAgGAGGCUCGGgaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 132096 | 0.7 | 0.616138 |
Target: 5'- aCCcGGAGcgCGUgCUCCGGGCCg-CCGa -3' miRNA: 3'- -GGuUCUCa-GCAgGAGGCUCGGgaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 104443 | 0.72 | 0.50686 |
Target: 5'- uCCAGGAGcgccgggcugcccUCGUcuccccgaaCCUCCGgguAGCCCUCCa -3' miRNA: 3'- -GGUUCUC-------------AGCA---------GGAGGC---UCGGGAGGc -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 80582 | 0.73 | 0.47957 |
Target: 5'- gCGGGGccGUCGUCCUCCGcgccGCCC-CCGc -3' miRNA: 3'- gGUUCU--CAGCAGGAGGCu---CGGGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 33472 | 0.73 | 0.452118 |
Target: 5'- -gAAGAGUCGUCgUCgGGGCucagcaCCUCCGa -3' miRNA: 3'- ggUUCUCAGCAGgAGgCUCG------GGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 2684 | 0.76 | 0.314851 |
Target: 5'- gCAucGGcUCGUCCUCCGcGCCCUCCa -3' miRNA: 3'- gGUucUC-AGCAGGAGGCuCGGGAGGc -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 107499 | 0.77 | 0.268229 |
Target: 5'- ---cGGGUCuUCCUCCGAGCCCcCCGu -3' miRNA: 3'- gguuCUCAGcAGGAGGCUCGGGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 4686 | 0.77 | 0.268229 |
Target: 5'- ---cGGGUCuUCCUCCGAGCCCcCCGu -3' miRNA: 3'- gguuCUCAGcAGGAGGCUCGGGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 107216 | 0.8 | 0.201468 |
Target: 5'- cCCAGGcgcuGUccgCGUCCUCCGcGCCCUCCGc -3' miRNA: 3'- -GGUUCu---CA---GCAGGAGGCuCGGGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 4403 | 0.8 | 0.201468 |
Target: 5'- cCCAGGcgcuGUccgCGUCCUCCGcGCCCUCCGc -3' miRNA: 3'- -GGUUCu---CA---GCAGGAGGCuCGGGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 2404 | 0.8 | 0.178192 |
Target: 5'- gCCcAGAGUCGUCCUCCcccgagGGGCCCcCCGc -3' miRNA: 3'- -GGuUCUCAGCAGGAGG------CUCGGGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 105217 | 0.8 | 0.178192 |
Target: 5'- gCCcAGAGUCGUCCUCCcccgagGGGCCCcCCGc -3' miRNA: 3'- -GGuUCUCAGCAGGAGG------CUCGGGaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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