miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 92222 0.66 0.911152
Target:  5'- -uGGGCGGccaGCAGCGCGcgCUCucgAGCc -3'
miRNA:   3'- ggUCCGUCua-CGUCGUGCuaGGG---UCG- -5'
6657 3' -55.6 NC_001847.1 + 71156 0.66 0.911152
Target:  5'- gCAGGagcucgcggacCAGGUGCGGCACuuccugGAcgCCUGGCa -3'
miRNA:   3'- gGUCC-----------GUCUACGUCGUG------CUa-GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 78531 0.66 0.910545
Target:  5'- --cGGCuGGUGUcgccggaAGaCGCGAgUCCCGGCg -3'
miRNA:   3'- gguCCGuCUACG-------UC-GUGCU-AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 24745 0.66 0.909324
Target:  5'- gCCGGGCcgugcagccggcugAGGUGCGacGCGCGGUCgUcgaagAGCg -3'
miRNA:   3'- -GGUCCG--------------UCUACGU--CGUGCUAGgG-----UCG- -5'
6657 3' -55.6 NC_001847.1 + 18125 0.66 0.90871
Target:  5'- gCCGGGCAGAcaggaGCgcccaggcgaaaauAGCuGCGAUcagccacgcucgcCCCAGCg -3'
miRNA:   3'- -GGUCCGUCUa----CG--------------UCG-UGCUA-------------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 54681 0.66 0.904974
Target:  5'- cUCGGGCGG-UGCAucCGCGA--CCAGCg -3'
miRNA:   3'- -GGUCCGUCuACGUc-GUGCUagGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 5374 0.66 0.904974
Target:  5'- cCCAGGCuccgGCGGUcCGAgcggCCGGCg -3'
miRNA:   3'- -GGUCCGucuaCGUCGuGCUag--GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 71901 0.66 0.904974
Target:  5'- --uGGCGc-UGCAGCgGCGGaCCCGGCg -3'
miRNA:   3'- gguCCGUcuACGUCG-UGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 5012 0.66 0.904974
Target:  5'- --cGGCGGcgGCGGCGCGGaggggaagcUCgggcgaCCGGCg -3'
miRNA:   3'- gguCCGUCuaCGUCGUGCU---------AG------GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 108032 0.66 0.904974
Target:  5'- gCCGcGGCGGccgGCGGgGCGcgCgCGGCa -3'
miRNA:   3'- -GGU-CCGUCua-CGUCgUGCuaGgGUCG- -5'
6657 3' -55.6 NC_001847.1 + 130807 0.66 0.904974
Target:  5'- cCgGGGCGGAgGCGGCcGCGG-CCgaAGCg -3'
miRNA:   3'- -GgUCCGUCUaCGUCG-UGCUaGGg-UCG- -5'
6657 3' -55.6 NC_001847.1 + 27994 0.66 0.904974
Target:  5'- cCgGGGCGGAgGCGGCcGCGG-CCgaAGCg -3'
miRNA:   3'- -GgUCCGUCUaCGUCG-UGCUaGGg-UCG- -5'
6657 3' -55.6 NC_001847.1 + 72698 0.66 0.904974
Target:  5'- gCCGGGgAGA-GCGGC-CG--CCCGGUg -3'
miRNA:   3'- -GGUCCgUCUaCGUCGuGCuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 107825 0.66 0.904974
Target:  5'- --cGGCGGcgGCGGCGCGGaggggaagcUCgggcgaCCGGCg -3'
miRNA:   3'- gguCCGUCuaCGUCGUGCU---------AG------GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 99210 0.66 0.904974
Target:  5'- cCCAGGCGcaaGCGcGCGCGAcCgCCGGUg -3'
miRNA:   3'- -GGUCCGUcuaCGU-CGUGCUaG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 5219 0.66 0.904974
Target:  5'- gCCGcGGCGGccgGCGGgGCGcgCgCGGCa -3'
miRNA:   3'- -GGU-CCGUCua-CGUCgUGCuaGgGUCG- -5'
6657 3' -55.6 NC_001847.1 + 79980 0.66 0.904974
Target:  5'- gCCAGGCgAGccGCuGCGCGGcggugacgCCCcGCg -3'
miRNA:   3'- -GGUCCG-UCuaCGuCGUGCUa-------GGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 18482 0.66 0.904974
Target:  5'- uCCGugcGGCAGucGUAGCGCGcgCgcgCCAGCa -3'
miRNA:   3'- -GGU---CCGUCuaCGUCGUGCuaG---GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 97965 0.66 0.904974
Target:  5'- -gGGGUGGcUGUacgucAGCACGAggugccgcuUCCCGGCc -3'
miRNA:   3'- ggUCCGUCuACG-----UCGUGCU---------AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 108386 0.66 0.899208
Target:  5'- --cGGCAGGuguUGCAGUACGGgugucaaaaagcgcgCCgCGGCg -3'
miRNA:   3'- gguCCGUCU---ACGUCGUGCUa--------------GG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.