miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6658 5' -50 NC_001847.1 + 69681 0.66 0.9954
Target:  5'- gGCAGcGuuGGGcgcGGGGCCgGCGCUCGGu -3'
miRNA:   3'- -UGUUaCuuCUU---UCUCGG-CGUGAGCCu -5'
6658 5' -50 NC_001847.1 + 42960 0.66 0.9954
Target:  5'- cGCGcgGggGggGcGGGCCGCcggccgGCcCGGGu -3'
miRNA:   3'- -UGUuaCuuCuuU-CUCGGCG------UGaGCCU- -5'
6658 5' -50 NC_001847.1 + 41457 0.66 0.994624
Target:  5'- --cAUGAaccGGAacGAGAGCUGCACgcgCGGc -3'
miRNA:   3'- uguUACU---UCU--UUCUCGGCGUGa--GCCu -5'
6658 5' -50 NC_001847.1 + 130787 0.66 0.994624
Target:  5'- cGCGGUGGAGGc--GGCCGCgGC-CGGGg -3'
miRNA:   3'- -UGUUACUUCUuucUCGGCG-UGaGCCU- -5'
6658 5' -50 NC_001847.1 + 27974 0.66 0.994624
Target:  5'- cGCGGUGGAGGc--GGCCGCgGC-CGGGg -3'
miRNA:   3'- -UGUUACUUCUuucUCGGCG-UGaGCCU- -5'
6658 5' -50 NC_001847.1 + 8631 0.66 0.993744
Target:  5'- ----cGggGGAGcGGCCGCugcggACUCGGGc -3'
miRNA:   3'- uguuaCuuCUUUcUCGGCG-----UGAGCCU- -5'
6658 5' -50 NC_001847.1 + 4060 0.66 0.993744
Target:  5'- cACGGUGAacacgguaccgAGgcGGuugcuGCCGCACUUGGu -3'
miRNA:   3'- -UGUUACU-----------UCuuUCu----CGGCGUGAGCCu -5'
6658 5' -50 NC_001847.1 + 30436 0.66 0.993744
Target:  5'- gGCGcgGAGGcgccGGGGCUGCACgaggUGGGc -3'
miRNA:   3'- -UGUuaCUUCuu--UCUCGGCGUGa---GCCU- -5'
6658 5' -50 NC_001847.1 + 69101 0.66 0.993744
Target:  5'- cGCGcgGAcGGgcGGGCCGCGuuCUCGGc -3'
miRNA:   3'- -UGUuaCUuCUuuCUCGGCGU--GAGCCu -5'
6658 5' -50 NC_001847.1 + 109652 0.66 0.992753
Target:  5'- aGCGGggaguugGggGggGGGGCgGCGCUUGc- -3'
miRNA:   3'- -UGUUa------CuuCuuUCUCGgCGUGAGCcu -5'
6658 5' -50 NC_001847.1 + 75466 0.66 0.992753
Target:  5'- gACcggGggGGAGGGGCCagagcGCACgggCGGGc -3'
miRNA:   3'- -UGuuaCuuCUUUCUCGG-----CGUGa--GCCU- -5'
6658 5' -50 NC_001847.1 + 73117 0.66 0.992753
Target:  5'- -gGGUGgcGGAGGuAGCCGCcguGCUCGcGGa -3'
miRNA:   3'- ugUUACuuCUUUC-UCGGCG---UGAGC-CU- -5'
6658 5' -50 NC_001847.1 + 6839 0.66 0.992753
Target:  5'- aGCGGggaguugGggGggGGGGCgGCGCUUGc- -3'
miRNA:   3'- -UGUUa------CuuCuuUCUCGgCGUGAGCcu -5'
6658 5' -50 NC_001847.1 + 124740 0.66 0.992753
Target:  5'- gGCGAggcGGAGAGAGGaCCGCgGCUCGcGGg -3'
miRNA:   3'- -UGUUa--CUUCUUUCUcGGCG-UGAGC-CU- -5'
6658 5' -50 NC_001847.1 + 81110 0.66 0.992647
Target:  5'- cCAGUGGcugcuccAGAgcGcGCCGCGCgUCGGAc -3'
miRNA:   3'- uGUUACU-------UCUuuCuCGGCGUG-AGCCU- -5'
6658 5' -50 NC_001847.1 + 116453 0.66 0.99164
Target:  5'- gGCGGUGAcGc--GGGCCGUGCUgCGGGg -3'
miRNA:   3'- -UGUUACUuCuuuCUCGGCGUGA-GCCU- -5'
6658 5' -50 NC_001847.1 + 85514 0.67 0.990396
Target:  5'- cGCGAgGAAGAccAGGGCCGU-UUCGGGa -3'
miRNA:   3'- -UGUUaCUUCUu-UCUCGGCGuGAGCCU- -5'
6658 5' -50 NC_001847.1 + 93471 0.67 0.990396
Target:  5'- aGCAGgaucuccuUGAAGAGccgcGuGCCGCGCgUCGGGu -3'
miRNA:   3'- -UGUU--------ACUUCUUu---CuCGGCGUG-AGCCU- -5'
6658 5' -50 NC_001847.1 + 94666 0.67 0.987476
Target:  5'- --cGUGAcGGAAGAGCaccuCGCGCUCGuGGa -3'
miRNA:   3'- uguUACUuCUUUCUCG----GCGUGAGC-CU- -5'
6658 5' -50 NC_001847.1 + 92101 0.67 0.98578
Target:  5'- -gGAUGAGGAAGGAGUaguuggaguagCGCACcuuuUCGGc -3'
miRNA:   3'- ugUUACUUCUUUCUCG-----------GCGUG----AGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.