miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 3' -53.9 NC_001847.1 + 114737 0.66 0.943124
Target:  5'- cGGGAcCGGUgcCggcGGUCGCGGUCGc -3'
miRNA:   3'- cUCCUuGUCGaaGa--CCAGCGUCAGCa -5'
6659 3' -53.9 NC_001847.1 + 36711 0.66 0.927963
Target:  5'- -uGGAgGCGGCUUC-GGUCGCcGcCGUg -3'
miRNA:   3'- cuCCU-UGUCGAAGaCCAGCGuCaGCA- -5'
6659 3' -53.9 NC_001847.1 + 69016 0.67 0.904203
Target:  5'- gGAGGAugAGCUgCUGcggugcGUCGCGcuGUCGg -3'
miRNA:   3'- -CUCCUugUCGAaGAC------CAGCGU--CAGCa -5'
6659 3' -53.9 NC_001847.1 + 95761 0.67 0.890824
Target:  5'- cGGGGGGCGGCgcgggccgcUCUGG-CGCGGggggCGg -3'
miRNA:   3'- -CUCCUUGUCGa--------AGACCaGCGUCa---GCa -5'
6659 3' -53.9 NC_001847.1 + 95707 0.67 0.890824
Target:  5'- cGGGGGGCGGCgcgggccgcUCUGG-CGCGGggggCGg -3'
miRNA:   3'- -CUCCUUGUCGa--------AGACCaGCGUCa---GCa -5'
6659 3' -53.9 NC_001847.1 + 95653 0.67 0.890824
Target:  5'- cGGGGGGCGGCgcgggccgcUCUGG-CGCGGggggCGg -3'
miRNA:   3'- -CUCCUUGUCGa--------AGACCaGCGUCa---GCa -5'
6659 3' -53.9 NC_001847.1 + 37875 0.68 0.876481
Target:  5'- gGGGGAGCGGCUgCUGG-CGC--UCGa -3'
miRNA:   3'- -CUCCUUGUCGAaGACCaGCGucAGCa -5'
6659 3' -53.9 NC_001847.1 + 70311 0.68 0.868959
Target:  5'- aGGGGGCGGC-UCggcaccaGGUCGUAGUCu- -3'
miRNA:   3'- cUCCUUGUCGaAGa------CCAGCGUCAGca -5'
6659 3' -53.9 NC_001847.1 + 113925 0.68 0.853243
Target:  5'- aGAGGaAGCAGCgcgcGGUCGCGG-CGg -3'
miRNA:   3'- -CUCC-UUGUCGaagaCCAGCGUCaGCa -5'
6659 3' -53.9 NC_001847.1 + 11124 0.69 0.836677
Target:  5'- gGAGG-ACGGCUUCuUGGaCGCGG-CGg -3'
miRNA:   3'- -CUCCuUGUCGAAG-ACCaGCGUCaGCa -5'
6659 3' -53.9 NC_001847.1 + 84737 0.69 0.828094
Target:  5'- aGGGGGCGGCgaUCUGGUagaaGCGGUgGa -3'
miRNA:   3'- cUCCUUGUCGa-AGACCAg---CGUCAgCa -5'
6659 3' -53.9 NC_001847.1 + 96394 0.69 0.801243
Target:  5'- -cGGGcccGCcGCcacgCUGGUCGCAGUCGa -3'
miRNA:   3'- cuCCU---UGuCGaa--GACCAGCGUCAGCa -5'
6659 3' -53.9 NC_001847.1 + 83253 0.69 0.801243
Target:  5'- --aGAACuGCUUgUGGUCGCAGUgGc -3'
miRNA:   3'- cucCUUGuCGAAgACCAGCGUCAgCa -5'
6659 3' -53.9 NC_001847.1 + 99789 0.71 0.743417
Target:  5'- cGGGGGGCAGCgccUgUGGUgCGgGGUCGg -3'
miRNA:   3'- -CUCCUUGUCGa--AgACCA-GCgUCAGCa -5'
6659 3' -53.9 NC_001847.1 + 87035 0.73 0.618741
Target:  5'- -cGGGACAGcCUUUcGGUCGCGGUgGUc -3'
miRNA:   3'- cuCCUUGUC-GAAGaCCAGCGUCAgCA- -5'
6659 3' -53.9 NC_001847.1 + 18332 0.73 0.587202
Target:  5'- -cGGAGCAGCUgccgGG-CGCAGUCGc -3'
miRNA:   3'- cuCCUUGUCGAaga-CCaGCGUCAGCa -5'
6659 3' -53.9 NC_001847.1 + 3390 1.08 0.004386
Target:  5'- gGAGGAACAGCUUCUGGUCGCAGUCGUa -3'
miRNA:   3'- -CUCCUUGUCGAAGACCAGCGUCAGCA- -5'
6659 3' -53.9 NC_001847.1 + 106203 1.08 0.004386
Target:  5'- gGAGGAACAGCUUCUGGUCGCAGUCGUa -3'
miRNA:   3'- -CUCCUUGUCGAAGACCAGCGUCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.