miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 99190 0.76 0.198183
Target:  5'- cUCGUGGUCcucGCGCgAGGCgGCCGCGcgGCg -3'
miRNA:   3'- -AGUACCGG---UGCG-UCCGgCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 3425 1.12 0.000665
Target:  5'- cUCAUGGCCACGCAGGCCGCCACGUGCg -3'
miRNA:   3'- -AGUACCGGUGCGUCCGGCGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 30988 0.83 0.073108
Target:  5'- aCAUGGCCGCGCAGGgCGCgGCGcugggGCu -3'
miRNA:   3'- aGUACCGGUGCGUCCgGCGgUGCa----CG- -5'
6659 5' -60 NC_001847.1 + 16659 0.78 0.150774
Target:  5'- aCGUGGCgGCGCGGGCgCGUCGCGcagccuuggcUGCg -3'
miRNA:   3'- aGUACCGgUGCGUCCG-GCGGUGC----------ACG- -5'
6659 5' -60 NC_001847.1 + 3712 0.77 0.170896
Target:  5'- ---gGGCCcCGC-GGCCGCCGCGUaGCg -3'
miRNA:   3'- aguaCCGGuGCGuCCGGCGGUGCA-CG- -5'
6659 5' -60 NC_001847.1 + 2872 0.82 0.087857
Target:  5'- ---aGGCCgacGCGCGGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 62152 0.8 0.123026
Target:  5'- gCAUGGCCgcggcgGCGUAGGCCGCCGUGUaGCc -3'
miRNA:   3'- aGUACCGG------UGCGUCCGGCGGUGCA-CG- -5'
6659 5' -60 NC_001847.1 + 45325 0.78 0.143345
Target:  5'- --uUGGCCGCGCGcuccacggcGGCUGCCACG-GCg -3'
miRNA:   3'- aguACCGGUGCGU---------CCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 886 0.77 0.188689
Target:  5'- ---cGGcCCGCGCcgGGGCCGCCGCG-GCc -3'
miRNA:   3'- aguaCC-GGUGCG--UCCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 29223 0.76 0.208091
Target:  5'- ---cGGCCGCgGCGGGCCGCgGCcUGCc -3'
miRNA:   3'- aguaCCGGUG-CGUCCGGCGgUGcACG- -5'
6659 5' -60 NC_001847.1 + 120951 0.66 0.730075
Target:  5'- -gGUGGCUgAUGUGGGCggacccagCGCCGCGUaaGCg -3'
miRNA:   3'- agUACCGG-UGCGUCCG--------GCGGUGCA--CG- -5'
6659 5' -60 NC_001847.1 + 78281 0.8 0.119911
Target:  5'- --uUGGCCGCGCccGGGCCGCCGgGcGCa -3'
miRNA:   3'- aguACCGGUGCG--UCCGGCGGUgCaCG- -5'
6659 5' -60 NC_001847.1 + 73769 0.82 0.087857
Target:  5'- ---cGGCgGCGCGGGCCGCUACGaGCg -3'
miRNA:   3'- aguaCCGgUGCGUCCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 57998 0.77 0.184093
Target:  5'- -gGUGGCgGCGCAGGCgGCgGCGgucGCg -3'
miRNA:   3'- agUACCGgUGCGUCCGgCGgUGCa--CG- -5'
6659 5' -60 NC_001847.1 + 88951 0.77 0.184093
Target:  5'- ---cGGCCGcCGCcGGCCGCUaccGCGUGCg -3'
miRNA:   3'- aguaCCGGU-GCGuCCGGCGG---UGCACG- -5'
6659 5' -60 NC_001847.1 + 53537 0.8 0.119911
Target:  5'- ---cGGCCACGCcGGCgGCCuCGUGCa -3'
miRNA:   3'- aguaCCGGUGCGuCCGgCGGuGCACG- -5'
6659 5' -60 NC_001847.1 + 52626 0.76 0.203084
Target:  5'- ---aGGCCGCGCGGaUCGCCACGUuGCc -3'
miRNA:   3'- aguaCCGGUGCGUCcGGCGGUGCA-CG- -5'
6659 5' -60 NC_001847.1 + 102318 0.76 0.208091
Target:  5'- ---cGGCCACGCGGGCC-UCGCGcGCu -3'
miRNA:   3'- aguaCCGGUGCGUCCGGcGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 31452 0.79 0.139757
Target:  5'- ---cGGCCccgGCGCGGGCCGCCGCcgcgcguggagGUGCu -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUG-----------CACG- -5'
6659 5' -60 NC_001847.1 + 28870 0.77 0.178267
Target:  5'- cCAUGGCCGCGCAGaacgcgcugugggcGCUGCCgcACGUGg -3'
miRNA:   3'- aGUACCGGUGCGUC--------------CGGCGG--UGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.