Results 21 - 40 of 758 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6659 | 5' | -60 | NC_001847.1 | + | 57937 | 0.66 | 0.730075 |
Target: 5'- ---cGGCC-CGCGGcuCCGUCGCGgGCa -3' miRNA: 3'- aguaCCGGuGCGUCc-GGCGGUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 103304 | 0.66 | 0.730075 |
Target: 5'- ---cGGCgGCG-GGGCgGCCGCGcGCc -3' miRNA: 3'- aguaCCGgUGCgUCCGgCGGUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 121722 | 0.66 | 0.730075 |
Target: 5'- uUCAcGGCgCGCGCuGGCgCGCC-CGUc- -3' miRNA: 3'- -AGUaCCG-GUGCGuCCG-GCGGuGCAcg -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 133309 | 0.66 | 0.730075 |
Target: 5'- gCcgGGCgCugGaCGGGCgCGCCggACGUGa -3' miRNA: 3'- aGuaCCG-GugC-GUCCG-GCGG--UGCACg -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 81299 | 0.66 | 0.730075 |
Target: 5'- cCAgcGCCGC-CAGcGCCGCCGC-UGCc -3' miRNA: 3'- aGUacCGGUGcGUC-CGGCGGUGcACG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 12549 | 0.66 | 0.730075 |
Target: 5'- --uUGGCgggACGCAGGUgcgcaacgggCGCCGCGUacGCg -3' miRNA: 3'- aguACCGg--UGCGUCCG----------GCGGUGCA--CG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 53434 | 0.66 | 0.730075 |
Target: 5'- gCGUcGGCgCGCGCGuGCCGCaGCGcGCg -3' miRNA: 3'- aGUA-CCG-GUGCGUcCGGCGgUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 5588 | 0.66 | 0.729106 |
Target: 5'- -gGUGGCCGCGCGguagcuccacucGGUagacgggcgugggCGCCGCGgucccGCg -3' miRNA: 3'- agUACCGGUGCGU------------CCG-------------GCGGUGCa----CG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 62159 | 0.66 | 0.729106 |
Target: 5'- ---cGGCCagcucccGCGCGGGCgCGuCCGCGUc- -3' miRNA: 3'- aguaCCGG-------UGCGUCCG-GC-GGUGCAcg -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 44867 | 0.66 | 0.729106 |
Target: 5'- aCGUcGCCGCGCcgcucaaAGGCCGCgugaACGaGCg -3' miRNA: 3'- aGUAcCGGUGCG-------UCCGGCGg---UGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 6328 | 0.66 | 0.724252 |
Target: 5'- ---cGGCCACGUAcgcgggugccccggcGGCaaccgCGCCGCGgGCg -3' miRNA: 3'- aguaCCGGUGCGU---------------CCG-----GCGGUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 118767 | 0.66 | 0.724252 |
Target: 5'- gUUGUGGCgCGCGguGugagcggcaccggcaGCCGCCAgcgccuccaggcCGUGCc -3' miRNA: 3'- -AGUACCG-GUGCguC---------------CGGCGGU------------GCACG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 42935 | 0.66 | 0.720355 |
Target: 5'- --cUGGCCGCcCAagcGGCCgacGCCGCGcGCg -3' miRNA: 3'- aguACCGGUGcGU---CCGG---CGGUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 28346 | 0.66 | 0.720355 |
Target: 5'- gCggGGCCGCGCgcccGGGCC-CC-CG-GCg -3' miRNA: 3'- aGuaCCGGUGCG----UCCGGcGGuGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 71948 | 0.66 | 0.720355 |
Target: 5'- ---aGaGCgCGCGCGGGCUcgGCCAUG-GCg -3' miRNA: 3'- aguaC-CG-GUGCGUCCGG--CGGUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 131159 | 0.66 | 0.720355 |
Target: 5'- gCggGGCCGCGCgcccGGGCC-CC-CG-GCg -3' miRNA: 3'- aGuaCCGGUGCG----UCCGGcGGuGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 29033 | 0.66 | 0.720355 |
Target: 5'- cCAgaGCCGCGCGcGCCGgCagACGUGCu -3' miRNA: 3'- aGUacCGGUGCGUcCGGCgG--UGCACG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 33150 | 0.66 | 0.720355 |
Target: 5'- gCGUGGCgaGCGCGgcGGUugCGCCGC-UGCa -3' miRNA: 3'- aGUACCGg-UGCGU--CCG--GCGGUGcACG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 8064 | 0.66 | 0.720355 |
Target: 5'- ---cGGCCcgcGCGCAGaggggggcaCCGCCGCG-GCg -3' miRNA: 3'- aguaCCGG---UGCGUCc--------GGCGGUGCaCG- -5' |
|||||||
6659 | 5' | -60 | NC_001847.1 | + | 7251 | 0.66 | 0.720355 |
Target: 5'- -gGUGGCUGUGCGGG-CGCgGCGgggGCa -3' miRNA: 3'- agUACCGGUGCGUCCgGCGgUGCa--CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home