miRNA display CGI


Results 21 - 40 of 758 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 57937 0.66 0.730075
Target:  5'- ---cGGCC-CGCGGcuCCGUCGCGgGCa -3'
miRNA:   3'- aguaCCGGuGCGUCc-GGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 103304 0.66 0.730075
Target:  5'- ---cGGCgGCG-GGGCgGCCGCGcGCc -3'
miRNA:   3'- aguaCCGgUGCgUCCGgCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 121722 0.66 0.730075
Target:  5'- uUCAcGGCgCGCGCuGGCgCGCC-CGUc- -3'
miRNA:   3'- -AGUaCCG-GUGCGuCCG-GCGGuGCAcg -5'
6659 5' -60 NC_001847.1 + 133309 0.66 0.730075
Target:  5'- gCcgGGCgCugGaCGGGCgCGCCggACGUGa -3'
miRNA:   3'- aGuaCCG-GugC-GUCCG-GCGG--UGCACg -5'
6659 5' -60 NC_001847.1 + 81299 0.66 0.730075
Target:  5'- cCAgcGCCGC-CAGcGCCGCCGC-UGCc -3'
miRNA:   3'- aGUacCGGUGcGUC-CGGCGGUGcACG- -5'
6659 5' -60 NC_001847.1 + 12549 0.66 0.730075
Target:  5'- --uUGGCgggACGCAGGUgcgcaacgggCGCCGCGUacGCg -3'
miRNA:   3'- aguACCGg--UGCGUCCG----------GCGGUGCA--CG- -5'
6659 5' -60 NC_001847.1 + 53434 0.66 0.730075
Target:  5'- gCGUcGGCgCGCGCGuGCCGCaGCGcGCg -3'
miRNA:   3'- aGUA-CCG-GUGCGUcCGGCGgUGCaCG- -5'
6659 5' -60 NC_001847.1 + 5588 0.66 0.729106
Target:  5'- -gGUGGCCGCGCGguagcuccacucGGUagacgggcgugggCGCCGCGgucccGCg -3'
miRNA:   3'- agUACCGGUGCGU------------CCG-------------GCGGUGCa----CG- -5'
6659 5' -60 NC_001847.1 + 62159 0.66 0.729106
Target:  5'- ---cGGCCagcucccGCGCGGGCgCGuCCGCGUc- -3'
miRNA:   3'- aguaCCGG-------UGCGUCCG-GC-GGUGCAcg -5'
6659 5' -60 NC_001847.1 + 44867 0.66 0.729106
Target:  5'- aCGUcGCCGCGCcgcucaaAGGCCGCgugaACGaGCg -3'
miRNA:   3'- aGUAcCGGUGCG-------UCCGGCGg---UGCaCG- -5'
6659 5' -60 NC_001847.1 + 6328 0.66 0.724252
Target:  5'- ---cGGCCACGUAcgcgggugccccggcGGCaaccgCGCCGCGgGCg -3'
miRNA:   3'- aguaCCGGUGCGU---------------CCG-----GCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 118767 0.66 0.724252
Target:  5'- gUUGUGGCgCGCGguGugagcggcaccggcaGCCGCCAgcgccuccaggcCGUGCc -3'
miRNA:   3'- -AGUACCG-GUGCguC---------------CGGCGGU------------GCACG- -5'
6659 5' -60 NC_001847.1 + 42935 0.66 0.720355
Target:  5'- --cUGGCCGCcCAagcGGCCgacGCCGCGcGCg -3'
miRNA:   3'- aguACCGGUGcGU---CCGG---CGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 28346 0.66 0.720355
Target:  5'- gCggGGCCGCGCgcccGGGCC-CC-CG-GCg -3'
miRNA:   3'- aGuaCCGGUGCG----UCCGGcGGuGCaCG- -5'
6659 5' -60 NC_001847.1 + 71948 0.66 0.720355
Target:  5'- ---aGaGCgCGCGCGGGCUcgGCCAUG-GCg -3'
miRNA:   3'- aguaC-CG-GUGCGUCCGG--CGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 131159 0.66 0.720355
Target:  5'- gCggGGCCGCGCgcccGGGCC-CC-CG-GCg -3'
miRNA:   3'- aGuaCCGGUGCG----UCCGGcGGuGCaCG- -5'
6659 5' -60 NC_001847.1 + 29033 0.66 0.720355
Target:  5'- cCAgaGCCGCGCGcGCCGgCagACGUGCu -3'
miRNA:   3'- aGUacCGGUGCGUcCGGCgG--UGCACG- -5'
6659 5' -60 NC_001847.1 + 33150 0.66 0.720355
Target:  5'- gCGUGGCgaGCGCGgcGGUugCGCCGC-UGCa -3'
miRNA:   3'- aGUACCGg-UGCGU--CCG--GCGGUGcACG- -5'
6659 5' -60 NC_001847.1 + 8064 0.66 0.720355
Target:  5'- ---cGGCCcgcGCGCAGaggggggcaCCGCCGCG-GCg -3'
miRNA:   3'- aguaCCGG---UGCGUCc--------GGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 7251 0.66 0.720355
Target:  5'- -gGUGGCUGUGCGGG-CGCgGCGgggGCa -3'
miRNA:   3'- agUACCGGUGCGUCCgGCGgUGCa--CG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.