miRNA display CGI


Results 21 - 40 of 758 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 3425 1.12 0.000665
Target:  5'- cUCAUGGCCACGCAGGCCGCCACGUGCg -3'
miRNA:   3'- -AGUACCGGUGCGUCCGGCGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 1172 0.75 0.252071
Target:  5'- ---cGGCCGCGCAGaaggccaCCGCCGCGgccgGCa -3'
miRNA:   3'- aguaCCGGUGCGUCc------GGCGGUGCa---CG- -5'
6659 5' -60 NC_001847.1 + 30897 0.75 0.251477
Target:  5'- -gGUGGCCACGCgccuGGGCCcgcgcaccgcgguGCC-CGUGCc -3'
miRNA:   3'- agUACCGGUGCG----UCCGG-------------CGGuGCACG- -5'
6659 5' -60 NC_001847.1 + 95652 0.76 0.213203
Target:  5'- gCGgggGGCgGCGCGGGCCGCuCugGcGCg -3'
miRNA:   3'- aGUa--CCGgUGCGUCCGGCG-GugCaCG- -5'
6659 5' -60 NC_001847.1 + 57998 0.77 0.184093
Target:  5'- -gGUGGCgGCGCAGGCgGCgGCGgucGCg -3'
miRNA:   3'- agUACCGgUGCGUCCGgCGgUGCa--CG- -5'
6659 5' -60 NC_001847.1 + 46915 0.74 0.276799
Target:  5'- uUCGggGGgCGCGuCGGGCCcgggcuccggGCCGCGUGCg -3'
miRNA:   3'- -AGUa-CCgGUGC-GUCCGG----------CGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 97816 0.74 0.264201
Target:  5'- gCGUGGCCGCGuCGGGCgcgugcCGCCACacgGCu -3'
miRNA:   3'- aGUACCGGUGC-GUCCG------GCGGUGca-CG- -5'
6659 5' -60 NC_001847.1 + 45325 0.78 0.143345
Target:  5'- --uUGGCCGCGCGcuccacggcGGCUGCCACG-GCg -3'
miRNA:   3'- aguACCGGUGCGU---------CCGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 95509 0.76 0.218423
Target:  5'- cCGUgGGCCugGCGGGCgCGCCAgGcuUGCc -3'
miRNA:   3'- aGUA-CCGGugCGUCCG-GCGGUgC--ACG- -5'
6659 5' -60 NC_001847.1 + 95760 0.76 0.213203
Target:  5'- gCGgggGGCgGCGCGGGCCGCuCugGcGCg -3'
miRNA:   3'- aGUa--CCGgUGCGUCCGGCG-GugCaCG- -5'
6659 5' -60 NC_001847.1 + 62152 0.8 0.123026
Target:  5'- gCAUGGCCgcggcgGCGUAGGCCGCCGUGUaGCc -3'
miRNA:   3'- aGUACCGG------UGCGUCCGGCGGUGCA-CG- -5'
6659 5' -60 NC_001847.1 + 53537 0.8 0.119911
Target:  5'- ---cGGCCACGCcGGCgGCCuCGUGCa -3'
miRNA:   3'- aguaCCGGUGCGuCCGgCGGuGCACG- -5'
6659 5' -60 NC_001847.1 + 44047 0.74 0.283277
Target:  5'- ---aGGCgCGCGUcgGGGCCGCCcuguuCGUGCa -3'
miRNA:   3'- aguaCCG-GUGCG--UCCGGCGGu----GCACG- -5'
6659 5' -60 NC_001847.1 + 74438 0.74 0.276799
Target:  5'- gUCGUGGCgGCGCAcgacGCCGUgGCGcUGCa -3'
miRNA:   3'- -AGUACCGgUGCGUc---CGGCGgUGC-ACG- -5'
6659 5' -60 NC_001847.1 + 1448 0.75 0.246181
Target:  5'- gCGUGGCCaccguguaGCGCAcguuGCCGCCGCG-GCa -3'
miRNA:   3'- aGUACCGG--------UGCGUc---CGGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 99190 0.76 0.198183
Target:  5'- cUCGUGGUCcucGCGCgAGGCgGCCGCGcgGCg -3'
miRNA:   3'- -AGUACCGG---UGCG-UCCGgCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 88951 0.77 0.184093
Target:  5'- ---cGGCCGcCGCcGGCCGCUaccGCGUGCg -3'
miRNA:   3'- aguaCCGGU-GCGuCCGGCGG---UGCACG- -5'
6659 5' -60 NC_001847.1 + 78281 0.8 0.119911
Target:  5'- --uUGGCCGCGCccGGGCCGCCGgGcGCa -3'
miRNA:   3'- aguACCGGUGCG--UCCGGCGGUgCaCG- -5'
6659 5' -60 NC_001847.1 + 95706 0.76 0.213203
Target:  5'- gCGgggGGCgGCGCGGGCCGCuCugGcGCg -3'
miRNA:   3'- aGUa--CCGgUGCGUCCGGCG-GugCaCG- -5'
6659 5' -60 NC_001847.1 + 28918 0.75 0.229191
Target:  5'- gCGUGGCCAUGagccGCCGCUACGaUGCg -3'
miRNA:   3'- aGUACCGGUGCguc-CGGCGGUGC-ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.