miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
666 5' -52.8 AC_000018.1 + 16058 0.66 0.6665
Target:  5'- --cCUaUGcUCGCCGgaagagccgaaggaGGCGCAUCGCCAg -3'
miRNA:   3'- aaaGAaGC-AGUGGC--------------UCGUGUAGCGGU- -5'
666 5' -52.8 AC_000018.1 + 9384 0.66 0.669993
Target:  5'- -gUCgugcCGUCACCGAGaC-CAUgCGCCGc -3'
miRNA:   3'- aaAGaa--GCAGUGGCUC-GuGUA-GCGGU- -5'
666 5' -52.8 AC_000018.1 + 17620 0.68 0.576642
Target:  5'- --cCUUCGUCugUGgcGGCGCAucccUCGCCc -3'
miRNA:   3'- aaaGAAGCAGugGC--UCGUGU----AGCGGu -5'
666 5' -52.8 AC_000018.1 + 6919 0.68 0.565094
Target:  5'- ----cUCGUCaccGCCGAGCugGUaGCCAa -3'
miRNA:   3'- aaagaAGCAG---UGGCUCGugUAgCGGU- -5'
666 5' -52.8 AC_000018.1 + 9030 1.06 0.001347
Target:  5'- aUUUCUUCGUCACCGAGCACAUCGCCAc -3'
miRNA:   3'- -AAAGAAGCAGUGGCUCGUGUAGCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.