Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6660 | 3' | -68.1 | NC_001847.1 | + | 25124 | 0.66 | 0.341106 |
Target: 5'- aGAGaGcGGGCggCGGCCGcGGCUGCCUAa -3' miRNA: 3'- cUUC-CaCCCG--GCCGGCcCCGGCGGGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 82390 | 0.66 | 0.347599 |
Target: 5'- --uGGUcaGGGCgGGCCGcuuguccGGGaCGCCCAu -3' miRNA: 3'- cuuCCA--CCCGgCCGGC-------CCCgGCGGGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 32186 | 0.66 | 0.320103 |
Target: 5'- -----cGGccccCCGGCCGGGGCCcgagGCCCGc -3' miRNA: 3'- cuuccaCCc---GGCCGGCCCCGG----CGGGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 15128 | 0.66 | 0.366093 |
Target: 5'- cGgcGGcGGuGCUGGCCuugcuacugcgcgucGGGGCCGCUUg -3' miRNA: 3'- -CuuCCaCC-CGGCCGG---------------CCCCGGCGGGu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 131137 | 0.66 | 0.333996 |
Target: 5'- -cGGGcgccGGGcCCGGCgccccgCGGGGCCGCgCGc -3' miRNA: 3'- cuUCCa---CCC-GGCCG------GCCCCGGCGgGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 3976 | 0.66 | 0.353444 |
Target: 5'- cGAGGGcgccggGGGCCGGgCGcGcGGCCccgcggggcgccggGCCCGg -3' miRNA: 3'- -CUUCCa-----CCCGGCCgGC-C-CCGG--------------CGGGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 59549 | 0.66 | 0.341106 |
Target: 5'- aGgcGGUgGGGgCGGCgGGGGCgGUgCCGg -3' miRNA: 3'- -CuuCCA-CCCgGCCGgCCCCGgCG-GGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 87920 | 0.66 | 0.355654 |
Target: 5'- cGggGcGUgGGGCUGGgCGcGGCCGCgCAc -3' miRNA: 3'- -CuuC-CA-CCCGGCCgGCcCCGGCGgGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 76355 | 0.66 | 0.363089 |
Target: 5'- -----cGGGCC-GCCGGGGCgGaCCCc -3' miRNA: 3'- cuuccaCCCGGcCGGCCCCGgC-GGGu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 22923 | 0.66 | 0.363089 |
Target: 5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3' miRNA: 3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 105960 | 0.66 | 0.355654 |
Target: 5'- --cGGcGGcGCCGGCgGcgcggcGGGCCGCCUc -3' miRNA: 3'- cuuCCaCC-CGGCCGgC------CCCGGCGGGu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 134641 | 0.66 | 0.353444 |
Target: 5'- uGggGGcGGGCCGGCagcaggcgcggaggCGcGGGCa-CCCAu -3' miRNA: 3'- -CuuCCaCCCGGCCG--------------GC-CCCGgcGGGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 12353 | 0.66 | 0.347599 |
Target: 5'- --cGGUGGGCCuGGCuCGGGagcgucggcggcuGCgGCCUc -3' miRNA: 3'- cuuCCACCCGG-CCG-GCCC-------------CGgCGGGu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 70802 | 0.66 | 0.333996 |
Target: 5'- --cGGcgGGGCCGGgaGGGGauCCGCCgAg -3' miRNA: 3'- cuuCCa-CCCGGCCggCCCC--GGCGGgU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 28324 | 0.66 | 0.333996 |
Target: 5'- -cGGGcgccGGGcCCGGCgccccgCGGGGCCGCgCGc -3' miRNA: 3'- cuUCCa---CCC-GGCCG------GCCCCGGCGgGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 87429 | 0.66 | 0.341106 |
Target: 5'- -cGGGcgacGGGCUGGCguuccCGGcGGCCGCCa- -3' miRNA: 3'- cuUCCa---CCCGGCCG-----GCC-CCGGCGGgu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 56835 | 0.66 | 0.320103 |
Target: 5'- -cGGGgagGGGgCGGCCca-GCCGCCCGa -3' miRNA: 3'- cuUCCa--CCCgGCCGGcccCGGCGGGU- -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 32930 | 0.66 | 0.348326 |
Target: 5'- gGGAGGa-GGCCGGCggCGGGGCCGg--- -3' miRNA: 3'- -CUUCCacCCGGCCG--GCCCCGGCgggu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 92801 | 0.66 | 0.355654 |
Target: 5'- cGAGGacguGGCCGGCUGGaGcGCCGCUa- -3' miRNA: 3'- cUUCCac--CCGGCCGGCC-C-CGGCGGgu -5' |
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6660 | 3' | -68.1 | NC_001847.1 | + | 23022 | 0.66 | 0.363089 |
Target: 5'- uGGGGUGGGCUGGgCuGGGCUggGCUgGg -3' miRNA: 3'- cUUCCACCCGGCCgGcCCCGG--CGGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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