miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6660 3' -68.1 NC_001847.1 + 124210 0.77 0.058677
Target:  5'- gGAGGGgauucGGGCCGGCCGaggauucGGGCCGgCCGa -3'
miRNA:   3'- -CUUCCa----CCCGGCCGGC-------CCCGGCgGGU- -5'
6660 3' -68.1 NC_001847.1 + 75709 0.7 0.182157
Target:  5'- -----cGGGCCacgGGCCGcGGGCCGCCg- -3'
miRNA:   3'- cuuccaCCCGG---CCGGC-CCCGGCGGgu -5'
6660 3' -68.1 NC_001847.1 + 68213 0.7 0.177915
Target:  5'- aGggGGcgcacGGGCCGcGgCGGGGCCGCa-- -3'
miRNA:   3'- -CuuCCa----CCCGGC-CgGCCCCGGCGggu -5'
6660 3' -68.1 NC_001847.1 + 124549 0.7 0.17376
Target:  5'- -cGGGccGGcGCCGGCCcgcgcgcgcgggGGGGCCGCCg- -3'
miRNA:   3'- cuUCCa-CC-CGGCCGG------------CCCCGGCGGgu -5'
6660 3' -68.1 NC_001847.1 + 134645 0.71 0.169693
Target:  5'- cAGGG-GGGuuGGCgCGcGGCCGCCCc -3'
miRNA:   3'- cUUCCaCCCggCCG-GCcCCGGCGGGu -5'
6660 3' -68.1 NC_001847.1 + 107647 0.71 0.169693
Target:  5'- -cGGGUGGGUCGGCC--GGCCGUCa- -3'
miRNA:   3'- cuUCCACCCGGCCGGccCCGGCGGgu -5'
6660 3' -68.1 NC_001847.1 + 101061 0.71 0.165711
Target:  5'- -----cGaGGCCGGCCccGGGGCCGCCgCGg -3'
miRNA:   3'- cuuccaC-CCGGCCGG--CCCCGGCGG-GU- -5'
6660 3' -68.1 NC_001847.1 + 125915 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6660 3' -68.1 NC_001847.1 + 125885 0.71 0.165711
Target:  5'- uGGGGUGGGCUgGGCUGGGGUgGgCUg -3'
miRNA:   3'- cUUCCACCCGG-CCGGCCCCGgCgGGu -5'
6660 3' -68.1 NC_001847.1 + 6933 0.71 0.164533
Target:  5'- uGAAGGUgcacacgaagacGGGCCaGGCgCGGGGucgcggcggcgcuuCCGCCCGc -3'
miRNA:   3'- -CUUCCA------------CCCGG-CCG-GCCCC--------------GGCGGGU- -5'
6660 3' -68.1 NC_001847.1 + 75127 0.71 0.15061
Target:  5'- aGAAGGcccGGGCCccGCCGGGGCCGgCg- -3'
miRNA:   3'- -CUUCCa--CCCGGc-CGGCCCCGGCgGgu -5'
6660 3' -68.1 NC_001847.1 + 103693 0.72 0.140117
Target:  5'- cGgcGGcGGcCCGcGCCGGGGCCGCCgCGg -3'
miRNA:   3'- -CuuCCaCCcGGC-CGGCCCCGGCGG-GU- -5'
6660 3' -68.1 NC_001847.1 + 98698 0.73 0.115335
Target:  5'- cGAAGccgGGGCCGaaGCCGGGGCCGaagCCGg -3'
miRNA:   3'- -CUUCca-CCCGGC--CGGCCCCGGCg--GGU- -5'
6660 3' -68.1 NC_001847.1 + 98662 0.73 0.115335
Target:  5'- cGAAGccgGGGCCGaaGCCGGGGCCGaagCCGg -3'
miRNA:   3'- -CUUCca-CCCGGC--CGGCCCCGGCg--GGU- -5'
6660 3' -68.1 NC_001847.1 + 132330 0.73 0.115335
Target:  5'- cGGAGGUGccGGCgCGGCUGGcGGCCGCgCu -3'
miRNA:   3'- -CUUCCAC--CCG-GCCGGCC-CCGGCGgGu -5'
6660 3' -68.1 NC_001847.1 + 101150 0.73 0.107143
Target:  5'- cGggGGcugGGGCCggGGCCGGGGCCGg--- -3'
miRNA:   3'- -CuuCCa--CCCGG--CCGGCCCCGGCgggu -5'
6660 3' -68.1 NC_001847.1 + 54512 0.74 0.104536
Target:  5'- cGGGGUGGGgggCGGUggggCGGGGCCGUCCGg -3'
miRNA:   3'- cUUCCACCCg--GCCG----GCCCCGGCGGGU- -5'
6660 3' -68.1 NC_001847.1 + 70683 0.74 0.089215
Target:  5'- gGAGGGgaccgcgggcccgGGGCUGGCCGuGGCCGCCg- -3'
miRNA:   3'- -CUUCCa------------CCCGGCCGGCcCCGGCGGgu -5'
6660 3' -68.1 NC_001847.1 + 92176 0.76 0.065075
Target:  5'- -----cGGGCCGGCCGGcGGcCCGCCCc -3'
miRNA:   3'- cuuccaCCCGGCCGGCC-CC-GGCGGGu -5'
6660 3' -68.1 NC_001847.1 + 108489 1.07 0.000282
Target:  5'- cGAAGGUGGGCCGGCCGGGGCCGCCCAg -3'
miRNA:   3'- -CUUCCACCCGGCCGGCCCCGGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.