Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6660 | 5' | -58.7 | NC_001847.1 | + | 14141 | 0.74 | 0.310946 |
Target: 5'- -gCGGGgcccGCGCCUGGGcggccgcuAGGGCgacgGCCg -3' miRNA: 3'- aaGUCCa---CGCGGACCC--------UCCCGaa--UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 125929 | 0.66 | 0.71987 |
Target: 5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 125884 | 0.66 | 0.71987 |
Target: 5'- cUgGGGUGgGCUgggcugGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGa-----CCCuCCCGAa-UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 124548 | 0.66 | 0.715882 |
Target: 5'- -gCGGGccgGCGCCggcccgcgcgcgcGGGGGGGCc-GCCg -3' miRNA: 3'- aaGUCCa--CGCGGa------------CCCUCCCGaaUGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 102699 | 0.67 | 0.699822 |
Target: 5'- -gCAGG-GCGCC-GGGcGGGCggcgaaagGCCc -3' miRNA: 3'- aaGUCCaCGCGGaCCCuCCCGaa------UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 87913 | 0.67 | 0.699822 |
Target: 5'- -aCAGGggcgGgGCgUGGGGcuGGGCgcgGCCg -3' miRNA: 3'- aaGUCCa---CgCGgACCCU--CCCGaa-UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 134514 | 0.67 | 0.689708 |
Target: 5'- cUCGGGgGCGgg-GGGAGGcGCggGCCg -3' miRNA: 3'- aAGUCCaCGCggaCCCUCC-CGaaUGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 76393 | 0.67 | 0.679546 |
Target: 5'- cUCGGGggggGCGCCgGGGgccgcggcgGGGGC--ACCc -3' miRNA: 3'- aAGUCCa---CGCGGaCCC---------UCCCGaaUGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 124914 | 0.68 | 0.617022 |
Target: 5'- -gCAGGcGCGCCgGGGGcgacagcGGGCgcGCCc -3' miRNA: 3'- aaGUCCaCGCGGaCCCU-------CCCGaaUGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 125824 | 0.68 | 0.60779 |
Target: 5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 125764 | 0.68 | 0.60779 |
Target: 5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3' miRNA: 3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 62782 | 0.68 | 0.60779 |
Target: 5'- -cCGGGUcuGgGCCcGGGGGGGCgagAUCg -3' miRNA: 3'- aaGUCCA--CgCGGaCCCUCCCGaa-UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 45090 | 0.68 | 0.60779 |
Target: 5'- cUCGuGGUGCGCCgggacgggGGuGGGGGCagACa -3' miRNA: 3'- aAGU-CCACGCGGa-------CC-CUCCCGaaUGg -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 42609 | 0.68 | 0.597549 |
Target: 5'- -aCAGGgacgGCGCCgccgcgGaGGGGGGCggcagcGCCg -3' miRNA: 3'- aaGUCCa---CGCGGa-----C-CCUCCCGaa----UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 68064 | 0.68 | 0.587335 |
Target: 5'- cUCGcGGcGCGCCUGcGGcGGGGCgaacGCCg -3' miRNA: 3'- aAGU-CCaCGCGGAC-CC-UCCCGaa--UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 21507 | 0.7 | 0.526961 |
Target: 5'- -cCGGGcGCGCCUcGGcGGGGGCcgcgcggGCCa -3' miRNA: 3'- aaGUCCaCGCGGA-CC-CUCCCGaa-----UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 69562 | 0.7 | 0.517109 |
Target: 5'- -gCGcGUGUGCCUGGG-GGGCcacgugGCCg -3' miRNA: 3'- aaGUcCACGCGGACCCuCCCGaa----UGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 42995 | 0.71 | 0.459719 |
Target: 5'- -cCGGGaaCGCCgccGGGGGGGCgcGCCg -3' miRNA: 3'- aaGUCCacGCGGa--CCCUCCCGaaUGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 125445 | 0.72 | 0.40589 |
Target: 5'- -gCAGGgcGCGUCcgGGGAGGGCggGCUu -3' miRNA: 3'- aaGUCCa-CGCGGa-CCCUCCCGaaUGG- -5' |
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6660 | 5' | -58.7 | NC_001847.1 | + | 108525 | 1.09 | 0.001215 |
Target: 5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3' miRNA: 3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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