miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 9741 0.76 0.112527
Target:  5'- aCGCGaCCgGGCGGGCCCuGCCccgggGCGCc -3'
miRNA:   3'- gGCGC-GGgCCGUCCGGG-CGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 30417 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 98156 0.76 0.101807
Target:  5'- gCCGcCGCUCGGCgcGGGCCCGCUcgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGGCCG--UCCGGGCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 76923 0.75 0.118276
Target:  5'- gCUGcCGCCCGGCGGGCagauCCGCCcggaGCGCc -3'
miRNA:   3'- -GGC-GCGGGCCGUCCG----GGCGGaa--CGUG- -5'
6661 5' -65 NC_001847.1 + 73708 0.75 0.121251
Target:  5'- gCCGCGCCCGGC-GGCgCgGCCgcggGCGu -3'
miRNA:   3'- -GGCGCGGGCCGuCCG-GgCGGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 78324 0.75 0.124296
Target:  5'- gCGCGCgCC-GCGGGCCCGgCUUGgGCg -3'
miRNA:   3'- gGCGCG-GGcCGUCCGGGCgGAACgUG- -5'
6661 5' -65 NC_001847.1 + 61848 0.75 0.127412
Target:  5'- gCCGuCGCCgGcGUAGGCCgCGCCUgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGgC-CGUCCGG-GCGGAa---CGUG- -5'
6661 5' -65 NC_001847.1 + 21776 0.75 0.130601
Target:  5'- gCCGgGCCCGGC--GCCgGCCggGCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGgCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 89631 0.75 0.118276
Target:  5'- uCCGCGCCgcccggCGGCGGcGCCCGCCccGgGCg -3'
miRNA:   3'- -GGCGCGG------GCCGUC-CGGGCGGaaCgUG- -5'
6661 5' -65 NC_001847.1 + 4014 0.75 0.124296
Target:  5'- gCCGgGCCCGGC--GCCCGCCUcuCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGGCGGAacGUG- -5'
6661 5' -65 NC_001847.1 + 69151 0.75 0.118276
Target:  5'- gCGUGCCCGGCGGuGCaCauaGCCgUGCACu -3'
miRNA:   3'- gGCGCGGGCCGUC-CG-Gg--CGGaACGUG- -5'
6661 5' -65 NC_001847.1 + 21192 0.75 0.130601
Target:  5'- aCGCGCCCGGCGGcGUaggagacgCCGCCgcgaccGCGCg -3'
miRNA:   3'- gGCGCGGGCCGUC-CG--------GGCGGaa----CGUG- -5'
6661 5' -65 NC_001847.1 + 124589 0.75 0.130601
Target:  5'- gCCGgGCCCGGC--GCCgGCCggGCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGgCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 98062 0.75 0.127412
Target:  5'- uCCGCGCUCaGGCGGGCCaguaCCgcgUGCACc -3'
miRNA:   3'- -GGCGCGGG-CCGUCCGGgc--GGa--ACGUG- -5'
6661 5' -65 NC_001847.1 + 106827 0.75 0.124296
Target:  5'- gCCGgGCCCGGC--GCCCGCCUcuCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGGCGGAacGUG- -5'
6661 5' -65 NC_001847.1 + 10444 0.75 0.121251
Target:  5'- cCCGCGCCCGGCuccccuGGCC-GCgUUGCu- -3'
miRNA:   3'- -GGCGCGGGCCGu-----CCGGgCGgAACGug -5'
6661 5' -65 NC_001847.1 + 46582 0.74 0.158866
Target:  5'- uCCGCGCCgGGCgucAGcCCCGCCg-GCGCg -3'
miRNA:   3'- -GGCGCGGgCCG---UCcGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 104005 0.74 0.155052
Target:  5'- gCCGCGgCCGGCA-GCUCGUCggGCGCc -3'
miRNA:   3'- -GGCGCgGGCCGUcCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 43260 0.74 0.155052
Target:  5'- gCgGCGCCCGGgGGGCaccugcugcgaCGCCgcgcgUGCGCg -3'
miRNA:   3'- -GgCGCGGGCCgUCCGg----------GCGGa----ACGUG- -5'
6661 5' -65 NC_001847.1 + 7403 0.74 0.154675
Target:  5'- gCGCGCUCGGCAgacggcacgcggcGGCuuGCCaagGCGCa -3'
miRNA:   3'- gGCGCGGGCCGU-------------CCGggCGGaa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.