miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 131241 0.73 0.179234
Target:  5'- aCCgGCGCCCGcGCuGGCUaCGCCgcgGCGCc -3'
miRNA:   3'- -GG-CGCGGGC-CGuCCGG-GCGGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 131163 0.67 0.409378
Target:  5'- gCCGCG-CUGGCGcugcucacGGCCCaCCUcGCGCu -3'
miRNA:   3'- -GGCGCgGGCCGU--------CCGGGcGGAaCGUG- -5'
6661 5' -65 NC_001847.1 + 131142 0.68 0.361839
Target:  5'- gCCGgGCCCGGCgccccgcgGGGCCgcgCGCCcgggcccccgGCGCc -3'
miRNA:   3'- -GGCgCGGGCCG--------UCCGG---GCGGaa--------CGUG- -5'
6661 5' -65 NC_001847.1 + 130922 0.68 0.346868
Target:  5'- gCGCGCgCCGGCaccgcgcaGGGCuuuggCUGCCU-GCGCg -3'
miRNA:   3'- gGCGCG-GGCCG--------UCCG-----GGCGGAaCGUG- -5'
6661 5' -65 NC_001847.1 + 130602 0.74 0.140611
Target:  5'- gCCGCGCCacccGCGGGCggCCGCCgcgagGCACg -3'
miRNA:   3'- -GGCGCGGgc--CGUCCG--GGCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 130513 0.7 0.254675
Target:  5'- gCGCGCgagcgCCGGCGGGCC-GCCc-GCGCc -3'
miRNA:   3'- gGCGCG-----GGCCGUCCGGgCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 130386 0.73 0.16675
Target:  5'- gUCGuCGCCCGGCAGGCUCGagCUgGcCACg -3'
miRNA:   3'- -GGC-GCGGGCCGUCCGGGCg-GAaC-GUG- -5'
6661 5' -65 NC_001847.1 + 129925 0.66 0.46062
Target:  5'- gCGCGCCCcGCcGG-CCGCCgcgGCGa -3'
miRNA:   3'- gGCGCGGGcCGuCCgGGCGGaa-CGUg -5'
6661 5' -65 NC_001847.1 + 129800 0.69 0.333062
Target:  5'- gCCGCGgCCGGCuagccagcuccgaccGGCCgGCCUucUGC-Ca -3'
miRNA:   3'- -GGCGCgGGCCGu--------------CCGGgCGGA--ACGuG- -5'
6661 5' -65 NC_001847.1 + 129469 0.7 0.285078
Target:  5'- gCgGC-CCCGGCcGGCCCaCCUUcGCGCc -3'
miRNA:   3'- -GgCGcGGGCCGuCCGGGcGGAA-CGUG- -5'
6661 5' -65 NC_001847.1 + 129415 0.66 0.487483
Target:  5'- aCCGC-CCCgcgGGCAGGUaaGCCcucccagGCGCa -3'
miRNA:   3'- -GGCGcGGG---CCGUCCGggCGGaa-----CGUG- -5'
6661 5' -65 NC_001847.1 + 129312 0.77 0.087517
Target:  5'- -gGUGCaaGGCGGGCCUGCCggGCGCg -3'
miRNA:   3'- ggCGCGggCCGUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 129254 0.66 0.478444
Target:  5'- uCUGCGa-CGGCGcGG-CCGCCcUGCGCg -3'
miRNA:   3'- -GGCGCggGCCGU-CCgGGCGGaACGUG- -5'
6661 5' -65 NC_001847.1 + 129042 0.69 0.318276
Target:  5'- gCCGCGCCUcGCGGGCgucucgCGCCUccgcgaGCGCg -3'
miRNA:   3'- -GGCGCGGGcCGUCCGg-----GCGGAa-----CGUG- -5'
6661 5' -65 NC_001847.1 + 128836 0.68 0.369491
Target:  5'- gCCGCGCgCaucgaGGCcgaccucgccgAGGUCCGCUgccUGCGCg -3'
miRNA:   3'- -GGCGCG-Gg----CCG-----------UCCGGGCGGa--ACGUG- -5'
6661 5' -65 NC_001847.1 + 128462 0.73 0.16675
Target:  5'- gCGCGCCCGGCcGGCC-GCCgcgGCc- -3'
miRNA:   3'- gGCGCGGGCCGuCCGGgCGGaa-CGug -5'
6661 5' -65 NC_001847.1 + 128280 0.66 0.46062
Target:  5'- -aGCGCaaGGCGGGCCaaaGCaa-GCGCc -3'
miRNA:   3'- ggCGCGggCCGUCCGGg--CGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 128195 0.73 0.183577
Target:  5'- gCCGCGacCCCGcGCcuGGCCCGUCUucgugUGCACc -3'
miRNA:   3'- -GGCGC--GGGC-CGu-CCGGGCGGA-----ACGUG- -5'
6661 5' -65 NC_001847.1 + 128153 0.66 0.469489
Target:  5'- gUCGCguuuuaucuGCUgGGC-GGCCCGCCggGCGg -3'
miRNA:   3'- -GGCG---------CGGgCCGuCCGGGCGGaaCGUg -5'
6661 5' -65 NC_001847.1 + 127419 0.68 0.385123
Target:  5'- uCCGCGCCCGcGCccuGcGCCUgaauGCCcaagGCGCg -3'
miRNA:   3'- -GGCGCGGGC-CGu--C-CGGG----CGGaa--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.