miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 90820 0.78 0.083192
Target:  5'- aUCaCGCCCGGCGGGCaCCGCuCUgGCGCu -3'
miRNA:   3'- -GGcGCGGGCCGUCCG-GGCG-GAaCGUG- -5'
6661 5' -65 NC_001847.1 + 105911 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5'
6661 5' -65 NC_001847.1 + 104158 0.77 0.085328
Target:  5'- gCCGCGCCCuGCGcGGCCaUGuCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGGcCGU-CCGG-GC-GGAACGUG- -5'
6661 5' -65 NC_001847.1 + 129312 0.77 0.087517
Target:  5'- -gGUGCaaGGCGGGCCUGCCggGCGCg -3'
miRNA:   3'- ggCGCGggCCGUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 56859 0.77 0.094406
Target:  5'- uCUGCGCCCGGC-GGCCCGg---GCGCg -3'
miRNA:   3'- -GGCGCGGGCCGuCCGGGCggaaCGUG- -5'
6661 5' -65 NC_001847.1 + 97991 0.77 0.096815
Target:  5'- gCCGCuuCCCGGCcgccccaaAGGCCCGCUgggcgUGCGCg -3'
miRNA:   3'- -GGCGc-GGGCCG--------UCCGGGCGGa----ACGUG- -5'
6661 5' -65 NC_001847.1 + 54905 0.76 0.099281
Target:  5'- gCCGuCGaCCCGGCAacguGGCCCGCgUUGaCGCa -3'
miRNA:   3'- -GGC-GC-GGGCCGU----CCGGGCGgAAC-GUG- -5'
6661 5' -65 NC_001847.1 + 109673 0.76 0.101807
Target:  5'- gCgGCGCuuG-CuuuGGCCCGCCUUGCGCu -3'
miRNA:   3'- -GgCGCGggCcGu--CCGGGCGGAACGUG- -5'
6661 5' -65 NC_001847.1 + 77481 0.76 0.104393
Target:  5'- -gGCGCCCGGCccGGCCCGCCg-GCcCg -3'
miRNA:   3'- ggCGCGGGCCGu-CCGGGCGGaaCGuG- -5'
6661 5' -65 NC_001847.1 + 133230 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 103172 0.76 0.109752
Target:  5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3'
miRNA:   3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 70285 0.76 0.112527
Target:  5'- gCGCGCCUGGCGGGgUCGCg--GCGCg -3'
miRNA:   3'- gGCGCGGGCCGUCCgGGCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 112554 0.76 0.112527
Target:  5'- aCGCGaCCgGGCGGGCCCuGCCccgggGCGCc -3'
miRNA:   3'- gGCGC-GGgCCGUCCGGG-CGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 76923 0.75 0.118276
Target:  5'- gCUGcCGCCCGGCGGGCagauCCGCCcggaGCGCc -3'
miRNA:   3'- -GGC-GCGGGCCGUCCG----GGCGGaa--CGUG- -5'
6661 5' -65 NC_001847.1 + 10444 0.75 0.121251
Target:  5'- cCCGCGCCCGGCuccccuGGCC-GCgUUGCu- -3'
miRNA:   3'- -GGCGCGGGCCGu-----CCGGgCGgAACGug -5'
6661 5' -65 NC_001847.1 + 73708 0.75 0.121251
Target:  5'- gCCGCGCCCGGC-GGCgCgGCCgcggGCGu -3'
miRNA:   3'- -GGCGCGGGCCGuCCG-GgCGGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 106827 0.75 0.124296
Target:  5'- gCCGgGCCCGGC--GCCCGCCUcuCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGGCGGAacGUG- -5'
6661 5' -65 NC_001847.1 + 98062 0.75 0.127412
Target:  5'- uCCGCGCUCaGGCGGGCCaguaCCgcgUGCACc -3'
miRNA:   3'- -GGCGCGGG-CCGUCCGGgc--GGa--ACGUG- -5'
6661 5' -65 NC_001847.1 + 124589 0.75 0.130601
Target:  5'- gCCGgGCCCGGC--GCCgGCCggGCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGgCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 112970 0.74 0.137199
Target:  5'- cUCuCGCCCGaGCAGGCCgGCCcgcUGCGCc -3'
miRNA:   3'- -GGcGCGGGC-CGUCCGGgCGGa--ACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.