miRNA display CGI


Results 61 - 80 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 127351 0.68 0.354298
Target:  5'- gCCGCGgCaggggCGGCgGGGCCCgaGCCUcgGCACc -3'
miRNA:   3'- -GGCGCgG-----GCCG-UCCGGG--CGGAa-CGUG- -5'
6661 5' -65 NC_001847.1 + 127254 0.67 0.433708
Target:  5'- gCGCGCCCcgcgcGGCuAGGUgguuuuguggcggCCGCCUcUGCAg -3'
miRNA:   3'- gGCGCGGG-----CCG-UCCG-------------GGCGGA-ACGUg -5'
6661 5' -65 NC_001847.1 + 127171 0.66 0.46062
Target:  5'- -gGgGCCCGaGCAGGgcccuaaaaaCCCGCaugGCGCg -3'
miRNA:   3'- ggCgCGGGC-CGUCC----------GGGCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 127062 0.71 0.248923
Target:  5'- gCCGaucuCGCCgCGGCGGuGCCCcCCUcUGCGCg -3'
miRNA:   3'- -GGC----GCGG-GCCGUC-CGGGcGGA-ACGUG- -5'
6661 5' -65 NC_001847.1 + 127007 0.67 0.417671
Target:  5'- cCCGCGa--GGCucgucGGCCCGCCcgccccgcggUUGUACg -3'
miRNA:   3'- -GGCGCgggCCGu----CCGGGCGG----------AACGUG- -5'
6661 5' -65 NC_001847.1 + 126682 0.72 0.201886
Target:  5'- gCCGCcCCCGGCccGGCgCCGCCUccgacccgGCGCc -3'
miRNA:   3'- -GGCGcGGGCCGu-CCG-GGCGGAa-------CGUG- -5'
6661 5' -65 NC_001847.1 + 126538 0.66 0.46062
Target:  5'- cCCGCcCCCGGCcGaGCgCCGCCccugGCGg -3'
miRNA:   3'- -GGCGcGGGCCGuC-CG-GGCGGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 126376 0.72 0.197165
Target:  5'- gCCGCGCCCGGCGGauauGCCauuauaauguCGCaaaUGCGCu -3'
miRNA:   3'- -GGCGCGGGCCGUC----CGG----------GCGga-ACGUG- -5'
6661 5' -65 NC_001847.1 + 125783 0.66 0.450968
Target:  5'- aCCGgGCCauggcaagcgaguCGGCGGGCCgGCgggcgUGCAg -3'
miRNA:   3'- -GGCgCGG-------------GCCGUCCGGgCGga---ACGUg -5'
6661 5' -65 NC_001847.1 + 125634 0.7 0.266505
Target:  5'- gCCGCccGCUCGGCucGGGUCCGCUcgucgcgGCGCg -3'
miRNA:   3'- -GGCG--CGGGCCG--UCCGGGCGGaa-----CGUG- -5'
6661 5' -65 NC_001847.1 + 125450 0.68 0.354298
Target:  5'- gCGCGUCCggggagGGCGGGCuuGCCccggGCGg -3'
miRNA:   3'- gGCGCGGG------CCGUCCGggCGGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 125396 0.74 0.151321
Target:  5'- -gGCGCCCcggGGCAgGGCCCGCCcgGuCGCg -3'
miRNA:   3'- ggCGCGGG---CCGU-CCGGGCGGaaC-GUG- -5'
6661 5' -65 NC_001847.1 + 125068 0.7 0.266505
Target:  5'- cCCGCGCgCGGCggggcgcuGGGCCCGCgcgGC-Ca -3'
miRNA:   3'- -GGCGCGgGCCG--------UCCGGGCGgaaCGuG- -5'
6661 5' -65 NC_001847.1 + 125011 0.7 0.266505
Target:  5'- cUCGCGCUaCGGcCGGGCCCGCUcgcCGCg -3'
miRNA:   3'- -GGCGCGG-GCC-GUCCGGGCGGaacGUG- -5'
6661 5' -65 NC_001847.1 + 124967 0.67 0.426067
Target:  5'- gCGCGCaaaagCCGGCgcagcGGGCCgGCCUgcucggGCGa -3'
miRNA:   3'- gGCGCG-----GGCCG-----UCCGGgCGGAa-----CGUg -5'
6661 5' -65 NC_001847.1 + 124905 0.8 0.056696
Target:  5'- gCGgGCCCGGCAGGCgCGCCggGgGCg -3'
miRNA:   3'- gGCgCGGGCCGUCCGgGCGGaaCgUG- -5'
6661 5' -65 NC_001847.1 + 124589 0.75 0.130601
Target:  5'- gCCGgGCCCGGC--GCCgGCCggGCGCg -3'
miRNA:   3'- -GGCgCGGGCCGucCGGgCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 124545 0.68 0.346868
Target:  5'- -gGCGCgggCCGGCGccGGCCCGCgc-GCGCg -3'
miRNA:   3'- ggCGCG---GGCCGU--CCGGGCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 124506 0.68 0.346868
Target:  5'- uCCGCGUCCc-CAGGCaCCGCUagGUACa -3'
miRNA:   3'- -GGCGCGGGccGUCCG-GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 124436 0.71 0.248923
Target:  5'- gCgGCGCuuGGCcggcgcGGGCCgCGCCcggGCGCg -3'
miRNA:   3'- -GgCGCGggCCG------UCCGG-GCGGaa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.