miRNA display CGI


Results 21 - 40 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 6057 1.13 0.000518
Target:  5'- gGCGGUGAGCAAGCAGGGAGGCGCGGCa -3'
miRNA:   3'- -CGCCACUCGUUCGUCCCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 95759 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 95705 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 80289 0.74 0.252597
Target:  5'- aGCGGUGcGCGucaaAGguGGcguccGAGGCGCGGUu -3'
miRNA:   3'- -CGCCACuCGU----UCguCC-----CUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 32345 0.76 0.193038
Target:  5'- cGCGGaggGGGCccagcccccgcGCGGGGGGGCGcCGGCg -3'
miRNA:   3'- -CGCCa--CUCGuu---------CGUCCCUCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 49229 0.73 0.325026
Target:  5'- uUGGUGcuccacGCAaacGGCGGGGuGGCGcCGGCg -3'
miRNA:   3'- cGCCACu-----CGU---UCGUCCCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 86378 0.73 0.303845
Target:  5'- gGCGGcGGGCcgcGGCGGcGGGcGCGCGGCu -3'
miRNA:   3'- -CGCCaCUCGu--UCGUC-CCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 6839 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 57995 0.74 0.277278
Target:  5'- cGCGGUGGcggcGCAGGCGGcGGcGGuCGCGcGCg -3'
miRNA:   3'- -CGCCACU----CGUUCGUC-CCuCC-GCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 424 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 25719 0.79 0.134793
Target:  5'- cGCGGcUGGGCccuucacacaggcaaAAGUAGGGAGGCagggccGCGGCg -3'
miRNA:   3'- -CGCC-ACUCG---------------UUCGUCCCUCCG------CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 27746 0.79 0.126815
Target:  5'- gGCGGauGGUggGCGGGGAGGaCGCGGa -3'
miRNA:   3'- -CGCCacUCGuuCGUCCCUCC-GCGCCg -5'
6662 3' -60.3 NC_001847.1 + 132429 0.72 0.335279
Target:  5'- cGUGGUGGggcagguucgcaagcGCAAGCuGGaGGGCGCGGa -3'
miRNA:   3'- -CGCCACU---------------CGUUCGuCCcUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 127340 0.72 0.332326
Target:  5'- gGCGGccGGCugccgcGGCAGGGGcGGCGgGGCc -3'
miRNA:   3'- -CGCCacUCGu-----UCGUCCCU-CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 95651 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 12351 0.76 0.203676
Target:  5'- aGCGGUGGGCcuGGCucGGGAGcGUcgGCGGCu -3'
miRNA:   3'- -CGCCACUCGu-UCGu-CCCUC-CG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 96410 0.76 0.193985
Target:  5'- gGCGGcG-GCAauGGCGGGGccggcggcAGGCGCGGCc -3'
miRNA:   3'- -CGCCaCuCGU--UCGUCCC--------UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 96368 0.8 0.111581
Target:  5'- gGCGGUG-GCAauGGCGGGGccGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGU--UCGUCCCu-CCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 119535 0.74 0.252597
Target:  5'- cGCGGccGGCAGGCugggcaAGGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCacUCGUUCG------UCCCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 4802 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.