miRNA display CGI


Results 41 - 60 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 75639 0.66 0.709633
Target:  5'- aCGGcGAuGCcgGAGCc-GGAGGCGCGGg -3'
miRNA:   3'- cGCCaCU-CG--UUCGucCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 107780 0.66 0.699804
Target:  5'- cGCGcccGGGgGGGCAGcuGGGGCuGCGGCg -3'
miRNA:   3'- -CGCca-CUCgUUCGUCc-CUCCG-CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 70367 0.66 0.699804
Target:  5'- ----aGAGCGAGgGGGcgccGGGGCGCGaGCu -3'
miRNA:   3'- cgccaCUCGUUCgUCC----CUCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 35177 0.66 0.699804
Target:  5'- cCGG-GGGCAcGCGGccuucgaggaGGAGcgcGCGCGGCu -3'
miRNA:   3'- cGCCaCUCGUuCGUC----------CCUC---CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 130003 0.66 0.689921
Target:  5'- cGCGGUGGG--GGUGGGGGGGgGgaaGGg -3'
miRNA:   3'- -CGCCACUCguUCGUCCCUCCgCg--CCg -5'
6662 3' -60.3 NC_001847.1 + 94147 0.66 0.660027
Target:  5'- gGUGcUGGGCGAcaucucGCGGcGGcugcuGGGCGCGGCc -3'
miRNA:   3'- -CGCcACUCGUU------CGUC-CC-----UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 68451 0.66 0.660027
Target:  5'- cGCGG-GAGCGcccGCuGuGGAGGCGagGGUu -3'
miRNA:   3'- -CGCCaCUCGUu--CGuC-CCUCCGCg-CCG- -5'
6662 3' -60.3 NC_001847.1 + 105047 0.66 0.708653
Target:  5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3'
miRNA:   3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 69295 0.66 0.689921
Target:  5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3'
miRNA:   3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 86634 0.66 0.699804
Target:  5'- aGCGuGUGGGCGGGCcGcgccgccccGGAGcGCGCcGCg -3'
miRNA:   3'- -CGC-CACUCGUUCGuC---------CCUC-CGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 102849 0.66 0.709633
Target:  5'- cCGGggGGGUguuuuuGGGgGGGGGcggaaauuucGGCGCGGCg -3'
miRNA:   3'- cGCCa-CUCG------UUCgUCCCU----------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 87949 0.66 0.669025
Target:  5'- cGCGGUGAGCGuguucaaAGUgauauGGGAagagguguucggGGCcCGGCu -3'
miRNA:   3'- -CGCCACUCGU-------UCGu----CCCU------------CCGcGCCG- -5'
6662 3' -60.3 NC_001847.1 + 17886 0.66 0.660027
Target:  5'- gGCGGccccGCAgAGCAGGauuaGGGCGaCGGCg -3'
miRNA:   3'- -CGCCacu-CGU-UCGUCCc---UCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 64691 0.66 0.719398
Target:  5'- cGCGcGUGucGCAGuGC-GucAGGCGCGGCa -3'
miRNA:   3'- -CGC-CACu-CGUU-CGuCccUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 46774 0.66 0.708653
Target:  5'- cGCGGUaaagaggGGGgGGGgGGGGAGGgcuaCGGCa -3'
miRNA:   3'- -CGCCA-------CUCgUUCgUCCCUCCgc--GCCG- -5'
6662 3' -60.3 NC_001847.1 + 71518 0.66 0.698818
Target:  5'- cGCGGa-GGCAguAGCGGGcgaagggguagcaGAGGCacGCGGCc -3'
miRNA:   3'- -CGCCacUCGU--UCGUCC-------------CUCCG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 65115 0.66 0.719398
Target:  5'- cGCGGcucGGCuGGCGGuGGGGCuCGGCu -3'
miRNA:   3'- -CGCCac-UCGuUCGUCcCUCCGcGCCG- -5'
6662 3' -60.3 NC_001847.1 + 49046 0.66 0.709633
Target:  5'- cGUGGUG-GCGcGCAGcucacGGccgcGGGCGgCGGCa -3'
miRNA:   3'- -CGCCACuCGUuCGUC-----CC----UCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 44265 0.66 0.689921
Target:  5'- uCGGUGAuuacgGCGaucuaccacaccGGCGGcGcGGCGCGGCg -3'
miRNA:   3'- cGCCACU-----CGU------------UCGUCcCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 139 0.66 0.709633
Target:  5'- cGCGGgccucGGGCcccGGCcGGGGGGC-CGGg -3'
miRNA:   3'- -CGCCa----CUCGu--UCGuCCCUCCGcGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.