miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 108034 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 84528 0.75 0.240949
Target:  5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3'
miRNA:   3'- -CGCCAc-----UCGUUCGUCCC--UCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 23395 0.75 0.235295
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 115689 0.75 0.240949
Target:  5'- cGCGGcgGAGCGgcuggcccGGCAGcGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGU--------UCGUC-CCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 5221 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 109274 0.75 0.223784
Target:  5'- gGCGGgcuGCAAGCgAGGGGGGCGagcaagaUGGCg -3'
miRNA:   3'- -CGCCacuCGUUCG-UCCCUCCGC-------GCCG- -5'
6662 3' -60.3 NC_001847.1 + 4802 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 119535 0.74 0.252597
Target:  5'- cGCGGccGGCAGGCugggcaAGGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCacUCGUUCG------UCCCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 424 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 14201 0.74 0.277278
Target:  5'- gGCGGcgGGGCuGGCGGucaggccggccGGGGGCGUGGUg -3'
miRNA:   3'- -CGCCa-CUCGuUCGUC-----------CCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 31702 0.74 0.283741
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 80289 0.74 0.252597
Target:  5'- aGCGGUGcGCGucaaAGguGGcguccGAGGCGCGGUu -3'
miRNA:   3'- -CGCCACuCGU----UCguCC-----CUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 98580 0.74 0.283741
Target:  5'- cGCGGgaaguccauugGGGCGccGGCGcuuGGGcGGCGCGGCa -3'
miRNA:   3'- -CGCCa----------CUCGU--UCGU---CCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 134515 0.74 0.283741
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 107615 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 77109 0.74 0.283741
Target:  5'- cGCGGU-AGC-GGCGGGGcugcuucaAGGCGCGcGCg -3'
miRNA:   3'- -CGCCAcUCGuUCGUCCC--------UCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 57673 0.74 0.283741
Target:  5'- gGCGGUGGGCAcGguGGuGcuGGGCGCcGCg -3'
miRNA:   3'- -CGCCACUCGUuCguCC-C--UCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 121362 0.74 0.264705
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCguCCC----UCCGcgCCG- -5'
6662 3' -60.3 NC_001847.1 + 103237 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 57995 0.74 0.277278
Target:  5'- cGCGGUGGcggcGCAGGCGGcGGcGGuCGCGcGCg -3'
miRNA:   3'- -CGCCACU----CGUUCGUC-CCuCC-GCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.