miRNA display CGI


Results 41 - 60 of 429 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 10127 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 10134 0.67 0.649006
Target:  5'- aGCGGgcccGGccguagcGCGAGCGGGaGGGcuuuuucgacgcGCGCGGCu -3'
miRNA:   3'- -CGCCa---CU-------CGUUCGUCC-CUC------------CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 10725 0.71 0.378623
Target:  5'- aGCGccgccAGCGAGUuuAGGGGGGCGgGGCc -3'
miRNA:   3'- -CGCcac--UCGUUCG--UCCCUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 10841 0.67 0.599862
Target:  5'- cGCGcGacGGCGGcGCGuGGccGAGGCGCGGCg -3'
miRNA:   3'- -CGC-CacUCGUU-CGU-CC--CUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 10917 0.72 0.354943
Target:  5'- cGCGGUacuaccgcGAgGCGAGCcGGcuGGCGCGGCu -3'
miRNA:   3'- -CGCCA--------CU-CGUUCGuCCcuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 11348 0.67 0.599862
Target:  5'- aGCGG-GAGCAcucguacGCGcGGccGCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu------CGUcCCucCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 11782 0.67 0.639976
Target:  5'- -gGGcGGGCGGGCAGuGGcgcuuucgacccGGcGCGUGGCg -3'
miRNA:   3'- cgCCaCUCGUUCGUC-CC------------UC-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 11822 0.66 0.699804
Target:  5'- aCGGcacAGCGcGCGGGGGGGgG-GGCg -3'
miRNA:   3'- cGCCac-UCGUuCGUCCCUCCgCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 11884 0.69 0.511535
Target:  5'- aCGGUGuaaucugguGCGGcCGGGGuccgcgcuGGCGCGGCa -3'
miRNA:   3'- cGCCACu--------CGUUcGUCCCu-------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 12351 0.76 0.203676
Target:  5'- aGCGGUGGGCcuGGCucGGGAGcGUcgGCGGCu -3'
miRNA:   3'- -CGCCACUCGu-UCGu-CCCUC-CG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 12603 0.7 0.429056
Target:  5'- uGCGGccAGCGaccGGCAGGGuccGG-GCGGCa -3'
miRNA:   3'- -CGCCacUCGU---UCGUCCCu--CCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 12701 0.67 0.639976
Target:  5'- gGCGGgGuGCAGGCAGGccGGUGCcucggGGUg -3'
miRNA:   3'- -CGCCaCuCGUUCGUCCcuCCGCG-----CCG- -5'
6662 3' -60.3 NC_001847.1 + 12949 0.72 0.339746
Target:  5'- uGCGGUGgggcGGCGGGCcgGGGGuGGCcCGGUc -3'
miRNA:   3'- -CGCCAC----UCGUUCG--UCCCuCCGcGCCG- -5'
6662 3' -60.3 NC_001847.1 + 13114 0.67 0.619901
Target:  5'- cGCGGccgGGGCGcGC-GGGcGGCGCcGCg -3'
miRNA:   3'- -CGCCa--CUCGUuCGuCCCuCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 13308 0.66 0.678996
Target:  5'- cGCGGUcgucgaggcagacGGGCuccGGCAcGGGcGGCGagcaGGCg -3'
miRNA:   3'- -CGCCA-------------CUCGu--UCGU-CCCuCCGCg---CCG- -5'
6662 3' -60.3 NC_001847.1 + 13535 0.68 0.550277
Target:  5'- aGCGGc-AGCAAccgccGcCGGGGcGGCGCGGUg -3'
miRNA:   3'- -CGCCacUCGUU-----C-GUCCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 13692 0.67 0.598862
Target:  5'- cGCGGUccacgcuGAGC--GCcGGGAcGUGCGGCa -3'
miRNA:   3'- -CGCCA-------CUCGuuCGuCCCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 13867 0.68 0.56999
Target:  5'- aUGGUG-GCGA--GGGGGGGCGCcuuuGGCc -3'
miRNA:   3'- cGCCACuCGUUcgUCCCUCCGCG----CCG- -5'
6662 3' -60.3 NC_001847.1 + 13928 0.67 0.609873
Target:  5'- uCGGUGccGCGccgcGGCAGGGGGGcCGCcccGCg -3'
miRNA:   3'- cGCCACu-CGU----UCGUCCCUCC-GCGc--CG- -5'
6662 3' -60.3 NC_001847.1 + 14005 0.66 0.679991
Target:  5'- cGCGccgaGAGCAcggcAGCAGGcGGcGGCGCaGCg -3'
miRNA:   3'- -CGCca--CUCGU----UCGUCC-CU-CCGCGcCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.