miRNA display CGI


Results 41 - 60 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 21854 0.77 0.167301
Target:  5'- uCGGUGcAGCAGGUGGugcGGGGGCuGCGGCg -3'
miRNA:   3'- cGCCAC-UCGUUCGUC---CCUCCG-CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 109652 0.77 0.171508
Target:  5'- aGCGGgGAGUu-GgGGGGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGuuCgUCCCUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 128791 0.77 0.175374
Target:  5'- gGCGGUcagaccaGGGCGGGCGGGcGGGcGCGCaGGCg -3'
miRNA:   3'- -CGCCA-------CUCGUUCGUCC-CUC-CGCG-CCG- -5'
6662 3' -60.3 NC_001847.1 + 104886 0.77 0.180206
Target:  5'- aGCGGUGgcGGCGAGCGccccgcGGGGcccGCGCGGCg -3'
miRNA:   3'- -CGCCAC--UCGUUCGU------CCCUc--CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 94216 0.77 0.1847
Target:  5'- cGCGGcgGAGCucgcGGCGGGGcgcccGCGCGGCg -3'
miRNA:   3'- -CGCCa-CUCGu---UCGUCCCuc---CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 29065 0.76 0.193985
Target:  5'- gGCGGUGGGCugcguGGCGGuGGcGG-GCGGCg -3'
miRNA:   3'- -CGCCACUCGu----UCGUC-CCuCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 54385 0.76 0.208678
Target:  5'- uGCGGcGGGCGGccGCGGGcGAGGCG-GGCg -3'
miRNA:   3'- -CGCCaCUCGUU--CGUCC-CUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 87888 0.76 0.212242
Target:  5'- cGCGGcuuucUGGGCGgggcuuugcacaggGGCGGGGcguggggcuGGGCGCGGCc -3'
miRNA:   3'- -CGCC-----ACUCGU--------------UCGUCCC---------UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 59381 0.76 0.213785
Target:  5'- gGCGGccGGCAaaaaauacggAGcCGGcGGAGGCGCGGCg -3'
miRNA:   3'- -CGCCacUCGU----------UC-GUC-CCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 48485 0.75 0.218473
Target:  5'- cGCGGgucGAGCGcGGCgcgcuccGGGGcGGCGCGGCc -3'
miRNA:   3'- -CGCCa--CUCGU-UCG-------UCCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 27521 0.75 0.233621
Target:  5'- cGCGGcG-GC-GGCGGGGAcgcccgagaacggcGGCGCGGCg -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCU--------------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 126208 0.75 0.235295
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 108034 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 84528 0.75 0.240949
Target:  5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3'
miRNA:   3'- -CGCCAc-----UCGUUCGUCCC--UCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 115689 0.75 0.240949
Target:  5'- cGCGGcgGAGCGgcuggcccGGCAGcGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGU--------UCGUC-CCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 54530 0.75 0.246716
Target:  5'- gGCGGggccguccggGGGCGcagacGGCGGGGGcGGCGCGGa -3'
miRNA:   3'- -CGCCa---------CUCGU-----UCGUCCCU-CCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 103237 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 121362 0.74 0.264705
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCguCCC----UCCGcgCCG- -5'
6662 3' -60.3 NC_001847.1 + 57673 0.74 0.283741
Target:  5'- gGCGGUGGGCAcGguGGuGcuGGGCGCcGCg -3'
miRNA:   3'- -CGCCACUCGUuCguCC-C--UCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 107615 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.