miRNA display CGI


Results 61 - 80 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 139 0.66 0.709633
Target:  5'- cGCGGgccucGGGCcccGGCcGGGGGGC-CGGg -3'
miRNA:   3'- -CGCCa----CUCGu--UCGuCCCUCCGcGCCg -5'
6662 3' -60.3 NC_001847.1 + 2234 0.66 0.708653
Target:  5'- cGCGGcgcUGGGCGcgGGCGugugguaguccccGGGcGGCacGCGGCg -3'
miRNA:   3'- -CGCC---ACUCGU--UCGU-------------CCCuCCG--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 69295 0.66 0.689921
Target:  5'- cGCGGgcguGCGGGCGGaccGGcugccuuuuGGGCGCGGg -3'
miRNA:   3'- -CGCCacu-CGUUCGUC---CC---------UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 68451 0.66 0.660027
Target:  5'- cGCGG-GAGCGcccGCuGuGGAGGCGagGGUu -3'
miRNA:   3'- -CGCCaCUCGUu--CGuC-CCUCCGCg-CCG- -5'
6662 3' -60.3 NC_001847.1 + 18652 0.66 0.659026
Target:  5'- cCGGUGAGCGauccGGCGGGagugcagguacgcGAGGCcccGCaGCa -3'
miRNA:   3'- cGCCACUCGU----UCGUCC-------------CUCCG---CGcCG- -5'
6662 3' -60.3 NC_001847.1 + 84230 0.66 0.670024
Target:  5'- aCGGccgGGGCcgccGCgGGGGAGGaggGCGGCg -3'
miRNA:   3'- cGCCa--CUCGuu--CG-UCCCUCCg--CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 120675 0.66 0.689921
Target:  5'- uCGGUGAGCccgGAGacccaGAGGCcGCGGCc -3'
miRNA:   3'- cGCCACUCG---UUCgucc-CUCCG-CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 72394 0.66 0.689921
Target:  5'- gGUGGUGGacGCGGGCcccgacgcGGGGAcGGCcaCGGCc -3'
miRNA:   3'- -CGCCACU--CGUUCG--------UCCCU-CCGc-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 112940 0.66 0.689921
Target:  5'- aCGGac-GCGuGCuGGGAGGCGCuGCu -3'
miRNA:   3'- cGCCacuCGUuCGuCCCUCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 44265 0.66 0.689921
Target:  5'- uCGGUGAuuacgGCGaucuaccacaccGGCGGcGcGGCGCGGCg -3'
miRNA:   3'- cGCCACU-----CGU------------UCGUCcCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 94147 0.66 0.660027
Target:  5'- gGUGcUGGGCGAcaucucGCGGcGGcugcuGGGCGCGGCc -3'
miRNA:   3'- -CGCcACUCGUU------CGUC-CC-----UCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 71070 0.66 0.670024
Target:  5'- cCGGUGcuGGCGGcGCucGGccGGCGCGGCc -3'
miRNA:   3'- cGCCAC--UCGUU-CGucCCu-CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 66501 0.67 0.629938
Target:  5'- uCGGccAGCGGcGCGGuGGAGGCGCGccGCc -3'
miRNA:   3'- cGCCacUCGUU-CGUC-CCUCCGCGC--CG- -5'
6662 3' -60.3 NC_001847.1 + 119508 0.67 0.599862
Target:  5'- ----cGAGCccGAGCccGGAGGgGCGGCg -3'
miRNA:   3'- cgccaCUCG--UUCGucCCUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 29096 0.67 0.599862
Target:  5'- cCGGcGAGCAcGGCGcGGGcGGCGCGcgaGCg -3'
miRNA:   3'- cGCCaCUCGU-UCGU-CCCuCCGCGC---CG- -5'
6662 3' -60.3 NC_001847.1 + 22572 0.67 0.598862
Target:  5'- aGCGGUaAGCGGGCgccccGGGGcAGggcccgcccggucGCGUGGCa -3'
miRNA:   3'- -CGCCAcUCGUUCG-----UCCC-UC-------------CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 71149 0.67 0.629938
Target:  5'- cCGGcGAGCAggAGCucgcGGAccaGGUGCGGCa -3'
miRNA:   3'- cGCCaCUCGU--UCGuc--CCU---CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 33134 0.67 0.629938
Target:  5'- gGCGGcGAGCGcuuccGCGuGGcGA-GCGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUu----CGU-CC-CUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 125385 0.67 0.598862
Target:  5'- aGCGGUaAGCGGGCgccccGGGGcAGggcccgcccggucGCGUGGCa -3'
miRNA:   3'- -CGCCAcUCGUUCG-----UCCC-UC-------------CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 127076 0.67 0.599862
Target:  5'- gGCGGUGccccccucuGCGcGC-GGGccGCGCGGCu -3'
miRNA:   3'- -CGCCACu--------CGUuCGuCCCucCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.