miRNA display CGI


Results 61 - 80 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 98580 0.74 0.283741
Target:  5'- cGCGGgaaguccauugGGGCGccGGCGcuuGGGcGGCGCGGCa -3'
miRNA:   3'- -CGCCa----------CUCGU--UCGU---CCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 121189 0.73 0.290323
Target:  5'- uGCGG-GAGCGGcacuugcGCGGGGcggccccccugccgcGGCGCGGCa -3'
miRNA:   3'- -CGCCaCUCGUU-------CGUCCCu--------------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 71893 0.73 0.290323
Target:  5'- cGCGGUGAugGCGcugcAGCGGcGGAcccgGcGCGCGGCg -3'
miRNA:   3'- -CGCCACU--CGU----UCGUC-CCU----C-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 30042 0.73 0.290323
Target:  5'- cGCGGccgUGGGCGacguugccGGCGcGGuGGCGCGGCu -3'
miRNA:   3'- -CGCC---ACUCGU--------UCGUcCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 95705 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 134821 0.73 0.297025
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 32008 0.73 0.297025
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 95651 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 95759 0.73 0.297025
Target:  5'- cGCGGgGGGCGGcGCGGGccgcucuggcgcGGGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUCGUU-CGUCC------------CUCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 86378 0.73 0.303845
Target:  5'- gGCGGcGGGCcgcGGCGGcGGGcGCGCGGCu -3'
miRNA:   3'- -CGCCaCUCGu--UCGUC-CCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 114908 0.73 0.315715
Target:  5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCG-----------UCCC--------------UCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 73205 0.73 0.317134
Target:  5'- cGCGGgccgcgccgccgcUGAcGCgGAGgAGGGGGGCGgCGGCg -3'
miRNA:   3'- -CGCC-------------ACU-CG-UUCgUCCCUCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 76417 0.73 0.317846
Target:  5'- gGCGG-GGGCAccccgcGGC-GGGAGcGCGCGcGCg -3'
miRNA:   3'- -CGCCaCUCGU------UCGuCCCUC-CGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 107879 0.73 0.317846
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 5066 0.73 0.317846
Target:  5'- aCGGacGGCGGGCcGGGAGcGgGCGGCa -3'
miRNA:   3'- cGCCacUCGUUCGuCCCUC-CgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 7699 0.73 0.320703
Target:  5'- uGCGGUGcuggagcgcgccuugGGCAuucaggcGCAGGGcgcGGGCGCGGa -3'
miRNA:   3'- -CGCCAC---------------UCGUu------CGUCCC---UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 42256 0.73 0.325026
Target:  5'- gGUGGUGGGC-AGCAGcaccucGAGcucGCGCGGCg -3'
miRNA:   3'- -CGCCACUCGuUCGUCc-----CUC---CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 44426 0.73 0.325026
Target:  5'- aGCGGcu-GCGuucgcGCAcGGGGGCGCGGCg -3'
miRNA:   3'- -CGCCacuCGUu----CGUcCCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 3410 0.73 0.325026
Target:  5'- aGCGGgaGAGCA-GCccGGGGGCGCcaGGCg -3'
miRNA:   3'- -CGCCa-CUCGUuCGucCCUCCGCG--CCG- -5'
6662 3' -60.3 NC_001847.1 + 101082 0.73 0.325026
Target:  5'- cGCGGgggccGGGUcGGCGGGGcGGGCG-GGCg -3'
miRNA:   3'- -CGCCa----CUCGuUCGUCCC-UCCGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.