miRNA display CGI


Results 61 - 80 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 14201 0.74 0.277278
Target:  5'- gGCGGcgGGGCuGGCGGucaggccggccGGGGGCGUGGUg -3'
miRNA:   3'- -CGCCa-CUCGuUCGUC-----------CCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 14345 0.69 0.530777
Target:  5'- cGUGGUGgcGGCGccuGCGGGGAacgccgccaGcGCGCGGUc -3'
miRNA:   3'- -CGCCAC--UCGUu--CGUCCCU---------C-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 14568 0.68 0.560109
Target:  5'- cGCGG-GuGCuGGCGGGc--GCGCGGCu -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCcucCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 14791 0.66 0.699804
Target:  5'- cGCGGcGuacaaaaccGC-AGCGGcGGAGcuGCGCGGCg -3'
miRNA:   3'- -CGCCaCu--------CGuUCGUC-CCUC--CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 15333 0.81 0.088395
Target:  5'- aGCGG-GGGCGGGCGGGGGGuGCGUgauGGCu -3'
miRNA:   3'- -CGCCaCUCGUUCGUCCCUC-CGCG---CCG- -5'
6662 3' -60.3 NC_001847.1 + 15765 0.71 0.390031
Target:  5'- cGCGGgcgGcccgcuuucgccggcGGCAAGCGccgcgcggcGGGAGGCgGCGGUg -3'
miRNA:   3'- -CGCCa--C---------------UCGUUCGU---------CCCUCCG-CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 16575 0.69 0.511535
Target:  5'- cGCGG-GA-C-AGCGGGGucGGgGCGGCg -3'
miRNA:   3'- -CGCCaCUcGuUCGUCCCu-CCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 16618 0.71 0.394988
Target:  5'- cGUGGUcuuu--GgGGGGGGGCGCGGCg -3'
miRNA:   3'- -CGCCAcucguuCgUCCCUCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 16832 0.73 0.325026
Target:  5'- uCGGUGGcGCGGGCAucGGGGcGGCGCucgaGGCg -3'
miRNA:   3'- cGCCACU-CGUUCGU--CCCU-CCGCG----CCG- -5'
6662 3' -60.3 NC_001847.1 + 17286 0.7 0.455712
Target:  5'- gGCGcGUGgagcgcGGCGGGUAGuacucGGcGGCGCGGCa -3'
miRNA:   3'- -CGC-CAC------UCGUUCGUC-----CCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 17483 0.68 0.540497
Target:  5'- aCGGUcagGGGCAAguuGCGGGGGucGGCG-GGCg -3'
miRNA:   3'- cGCCA---CUCGUU---CGUCCCU--CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 17800 0.67 0.650008
Target:  5'- aCGGgccccAGCGGGCGGGaGGGCgccaugccaguGCGGCg -3'
miRNA:   3'- cGCCac---UCGUUCGUCCcUCCG-----------CGCCG- -5'
6662 3' -60.3 NC_001847.1 + 17886 0.66 0.660027
Target:  5'- gGCGGccccGCAgAGCAGGauuaGGGCGaCGGCg -3'
miRNA:   3'- -CGCCacu-CGU-UCGUCCc---UCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 18003 0.66 0.699804
Target:  5'- aGCGucgGGGCuguuGGGCGuGGGGGGCGuuGCg -3'
miRNA:   3'- -CGCca-CUCG----UUCGU-CCCUCCGCgcCG- -5'
6662 3' -60.3 NC_001847.1 + 18105 0.68 0.588876
Target:  5'- cGgGGUGcuccAGCAgcuccgcGGCGGuGGGGCGCGcGCg -3'
miRNA:   3'- -CgCCAC----UCGU-------UCGUCcCUCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 18652 0.66 0.659026
Target:  5'- cCGGUGAGCGauccGGCGGGagugcagguacgcGAGGCcccGCaGCa -3'
miRNA:   3'- cGCCACUCGU----UCGUCC-------------CUCCG---CGcCG- -5'
6662 3' -60.3 NC_001847.1 + 18721 0.7 0.435194
Target:  5'- cGCGGgGAGCGccAGCGGGcgguugauucuccaGAGGUGCGuGUg -3'
miRNA:   3'- -CGCCaCUCGU--UCGUCC--------------CUCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 19743 0.72 0.347285
Target:  5'- cGCGGcGGGCcgcuuAGCGGGaAGGCGgGGUg -3'
miRNA:   3'- -CGCCaCUCGu----UCGUCCcUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 19803 0.68 0.579914
Target:  5'- gGCGGaGGcGguGGCGGuGGcGGgGCGGCa -3'
miRNA:   3'- -CGCCaCU-CguUCGUC-CCuCCgCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 20065 0.69 0.492588
Target:  5'- uGCGG-GAGCGgcguGGCGGcucccGcGGCGCGGCc -3'
miRNA:   3'- -CGCCaCUCGU----UCGUCc----CuCCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.