miRNA display CGI


Results 61 - 80 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 3' -60.3 NC_001847.1 + 126208 0.75 0.235295
Target:  5'- -gGGUGGGCGgagcucacuuGGCGGGGucgucGGCGgGGCg -3'
miRNA:   3'- cgCCACUCGU----------UCGUCCCu----CCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 7699 0.73 0.320703
Target:  5'- uGCGGUGcuggagcgcgccuugGGCAuucaggcGCAGGGcgcGGGCGCGGa -3'
miRNA:   3'- -CGCCAC---------------UCGUu------CGUCCC---UCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 76417 0.73 0.317846
Target:  5'- gGCGG-GGGCAccccgcGGC-GGGAGcGCGCGcGCg -3'
miRNA:   3'- -CGCCaCUCGU------UCGuCCCUC-CGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 114908 0.73 0.315715
Target:  5'- cGCGG-GGGCGAGCcccuggggcacGGGGgcucgcguuuggcgGGGCGgGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCG-----------UCCC--------------UCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 134821 0.73 0.297025
Target:  5'- cGCGGgcgugGAGCGcgaAGCuccGGcGGGGCGCGGg -3'
miRNA:   3'- -CGCCa----CUCGU---UCGu--CC-CUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 121189 0.73 0.290323
Target:  5'- uGCGG-GAGCGGcacuugcGCGGGGcggccccccugccgcGGCGCGGCa -3'
miRNA:   3'- -CGCCaCUCGUU-------CGUCCCu--------------CCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 71893 0.73 0.290323
Target:  5'- cGCGGUGAugGCGcugcAGCGGcGGAcccgGcGCGCGGCg -3'
miRNA:   3'- -CGCCACU--CGU----UCGUC-CCU----C-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 30042 0.73 0.290323
Target:  5'- cGCGGccgUGGGCGacguugccGGCGcGGuGGCGCGGCu -3'
miRNA:   3'- -CGCC---ACUCGU--------UCGUcCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 98580 0.74 0.283741
Target:  5'- cGCGGgaaguccauugGGGCGccGGCGcuuGGGcGGCGCGGCa -3'
miRNA:   3'- -CGCCa----------CUCGU--UCGU---CCCuCCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 134515 0.74 0.283741
Target:  5'- uCGG-GGGCGGG--GGGAGGCGCGGg -3'
miRNA:   3'- cGCCaCUCGUUCguCCCUCCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 107615 0.74 0.283741
Target:  5'- uGCGGUG-GCcugggggagacgGGGUAGGGGGGCG-GGUg -3'
miRNA:   3'- -CGCCACuCG------------UUCGUCCCUCCGCgCCG- -5'
6662 3' -60.3 NC_001847.1 + 77109 0.74 0.283741
Target:  5'- cGCGGU-AGC-GGCGGGGcugcuucaAGGCGCGcGCg -3'
miRNA:   3'- -CGCCAcUCGuUCGUCCC--------UCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 57673 0.74 0.283741
Target:  5'- gGCGGUGGGCAcGguGGuGcuGGGCGCcGCg -3'
miRNA:   3'- -CGCCACUCGUuCguCC-C--UCCGCGcCG- -5'
6662 3' -60.3 NC_001847.1 + 121362 0.74 0.264705
Target:  5'- cGCGGcGGGCGGGguGGGgagcGGGCaaGGCg -3'
miRNA:   3'- -CGCCaCUCGUUCguCCC----UCCGcgCCG- -5'
6662 3' -60.3 NC_001847.1 + 103237 0.74 0.258593
Target:  5'- cGgGGcGGGCGGGCGGcGGcGGCGgCGGCa -3'
miRNA:   3'- -CgCCaCUCGUUCGUC-CCuCCGC-GCCG- -5'
6662 3' -60.3 NC_001847.1 + 54530 0.75 0.246716
Target:  5'- gGCGGggccguccggGGGCGcagacGGCGGGGGcGGCGCGGa -3'
miRNA:   3'- -CGCCa---------CUCGU-----UCGUCCCU-CCGCGCCg -5'
6662 3' -60.3 NC_001847.1 + 115689 0.75 0.240949
Target:  5'- cGCGGcgGAGCGgcuggcccGGCAGcGGGcGCGCGGCc -3'
miRNA:   3'- -CGCCa-CUCGU--------UCGUC-CCUcCGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 84528 0.75 0.240949
Target:  5'- aGCGGUaugguuGGCGGGCGGGGcgGGGCGUGcGCc -3'
miRNA:   3'- -CGCCAc-----UCGUUCGUCCC--UCCGCGC-CG- -5'
6662 3' -60.3 NC_001847.1 + 108034 0.75 0.235295
Target:  5'- cGCGGcG-GCcGGCGGGGcGcGCGCGGCa -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCuC-CGCGCCG- -5'
6662 3' -60.3 NC_001847.1 + 27521 0.75 0.233621
Target:  5'- cGCGGcG-GC-GGCGGGGAcgcccgagaacggcGGCGCGGCg -3'
miRNA:   3'- -CGCCaCuCGuUCGUCCCU--------------CCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.