miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6662 5' -57.3 NC_001847.1 + 41263 0.66 0.839494
Target:  5'- gCAGGUgcuUUUGCCcgaGCCCgCguUCCCCg -3'
miRNA:   3'- -GUCCGaguAAACGGa--UGGGgG--AGGGG- -5'
6662 5' -57.3 NC_001847.1 + 2448 0.66 0.839494
Target:  5'- aGGGC-CGcc-GCCUcgccguCCCCgUCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAu-----GGGGgAGGGG- -5'
6662 5' -57.3 NC_001847.1 + 105261 0.66 0.839494
Target:  5'- aGGGC-CGcc-GCCUcgccguCCCCgUCCCCg -3'
miRNA:   3'- gUCCGaGUaaaCGGAu-----GGGGgAGGGG- -5'
6662 5' -57.3 NC_001847.1 + 102187 0.66 0.839494
Target:  5'- -uGGcCUCcccgGCCUccuccGCCCCCccggCCCCg -3'
miRNA:   3'- guCC-GAGuaaaCGGA-----UGGGGGa---GGGG- -5'
6662 5' -57.3 NC_001847.1 + 7906 0.66 0.839494
Target:  5'- gGGGCgcgCGgcgGCCgccGCUUCUUCCCCc -3'
miRNA:   3'- gUCCGa--GUaaaCGGa--UGGGGGAGGGG- -5'
6662 5' -57.3 NC_001847.1 + 110366 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6662 5' -57.3 NC_001847.1 + 82557 0.66 0.831201
Target:  5'- gCGGGCUCg---GCCUcgGCCgCCgCCUCg -3'
miRNA:   3'- -GUCCGAGuaaaCGGA--UGGgGGaGGGG- -5'
6662 5' -57.3 NC_001847.1 + 7553 0.66 0.831201
Target:  5'- ---cCUUuugUGCCcccCCCCCUCCCCu -3'
miRNA:   3'- guccGAGuaaACGGau-GGGGGAGGGG- -5'
6662 5' -57.3 NC_001847.1 + 102250 0.66 0.831201
Target:  5'- -cGGCUUccccGCCgGCCCCCgaggCCUCg -3'
miRNA:   3'- guCCGAGuaaaCGGaUGGGGGa---GGGG- -5'
6662 5' -57.3 NC_001847.1 + 73814 0.66 0.822725
Target:  5'- uGGGCUaggcgcGCCcGCCCCg-CCCCg -3'
miRNA:   3'- gUCCGAguaaa-CGGaUGGGGgaGGGG- -5'
6662 5' -57.3 NC_001847.1 + 7969 0.66 0.822725
Target:  5'- gCGGGUUUuuaggGCCUgcucggGCCCCCcCUCCa -3'
miRNA:   3'- -GUCCGAGuaaa-CGGA------UGGGGGaGGGG- -5'
6662 5' -57.3 NC_001847.1 + 59671 0.66 0.814075
Target:  5'- --cGCcCGUgcGCuCUGgCCCCUCCCCc -3'
miRNA:   3'- gucCGaGUAaaCG-GAUgGGGGAGGGG- -5'
6662 5' -57.3 NC_001847.1 + 92175 0.66 0.805258
Target:  5'- cCGGGC-CGgccggcgGCCcGCCCCC-CCCg -3'
miRNA:   3'- -GUCCGaGUaaa----CGGaUGGGGGaGGGg -5'
6662 5' -57.3 NC_001847.1 + 46872 0.66 0.805258
Target:  5'- gCAGGCgaa---GCgCUcCCCCCgUCCCCg -3'
miRNA:   3'- -GUCCGaguaaaCG-GAuGGGGG-AGGGG- -5'
6662 5' -57.3 NC_001847.1 + 41843 0.66 0.805258
Target:  5'- aGGGCUgGg--GCacguCCCCCUCgCCa -3'
miRNA:   3'- gUCCGAgUaaaCGgau-GGGGGAGgGG- -5'
6662 5' -57.3 NC_001847.1 + 39864 0.66 0.805258
Target:  5'- -cGGCcgCAagcUUGCCggcGCCCCCgaucgcgCCCCc -3'
miRNA:   3'- guCCGa-GUa--AACGGa--UGGGGGa------GGGG- -5'
6662 5' -57.3 NC_001847.1 + 128288 0.67 0.796283
Target:  5'- gCGGGCcaaagCAagcGCCgcCCCCCcCCCCa -3'
miRNA:   3'- -GUCCGa----GUaaaCGGauGGGGGaGGGG- -5'
6662 5' -57.3 NC_001847.1 + 25475 0.67 0.796283
Target:  5'- gCGGGCcaaagCAagcGCCgcCCCCCcCCCCa -3'
miRNA:   3'- -GUCCGa----GUaaaCGGauGGGGGaGGGG- -5'
6662 5' -57.3 NC_001847.1 + 58738 0.67 0.787159
Target:  5'- gGGGUgcccccGCCgcgGCCCCCggcgCCCCc -3'
miRNA:   3'- gUCCGaguaaaCGGa--UGGGGGa---GGGG- -5'
6662 5' -57.3 NC_001847.1 + 64327 0.67 0.787159
Target:  5'- gGGGaCUCGgcgcucgGCggAUCCCCUCCCg -3'
miRNA:   3'- gUCC-GAGUaaa----CGgaUGGGGGAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.