Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 5' | -57.3 | NC_001847.1 | + | 6092 | 1.12 | 0.001118 |
Target: 5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3' miRNA: 3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 21454 | 0.69 | 0.648858 |
Target: 5'- -cGGCUCcc---CCUuCCCCCUCCCg -3' miRNA: 3'- guCCGAGuaaacGGAuGGGGGAGGGg -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 5855 | 0.69 | 0.659112 |
Target: 5'- cCAGGCcCGcc--CCUACcaguuCCCCUCCCCa -3' miRNA: 3'- -GUCCGaGUaaacGGAUG-----GGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 2448 | 0.66 | 0.839494 |
Target: 5'- aGGGC-CGcc-GCCUcgccguCCCCgUCCCCg -3' miRNA: 3'- gUCCGaGUaaaCGGAu-----GGGGgAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 23754 | 0.74 | 0.39731 |
Target: 5'- gGGGcCUgAUUUGCCUGUgCCCUCCCa -3' miRNA: 3'- gUCC-GAgUAAACGGAUGgGGGAGGGg -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 82151 | 0.74 | 0.39731 |
Target: 5'- -cGGCUCcgccaUGCCUGcgcguCCCCCUUCCCc -3' miRNA: 3'- guCCGAGuaa--ACGGAU-----GGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 700 | 0.73 | 0.414586 |
Target: 5'- aCAGaCUCGUcuuuaUUGCCgccgucgcGCCCCCUCCCUc -3' miRNA: 3'- -GUCcGAGUA-----AACGGa-------UGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 24199 | 0.73 | 0.441346 |
Target: 5'- gAGGCUCGUcgGCCcGCCCg--CCCCg -3' miRNA: 3'- gUCCGAGUAaaCGGaUGGGggaGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 10746 | 0.71 | 0.56701 |
Target: 5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3' miRNA: 3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 15483 | 0.7 | 0.618049 |
Target: 5'- gGGGCcgCcgUUGCCcucccgcccggcUGCCCCgUCCUCg -3' miRNA: 3'- gUCCGa-GuaAACGG------------AUGGGGgAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 103205 | 0.7 | 0.587335 |
Target: 5'- gCAGGCUCGUccGCUUACCCgCCgcgcgagCCgCg -3' miRNA: 3'- -GUCCGAGUAaaCGGAUGGG-GGa------GGgG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 7123 | 0.71 | 0.546869 |
Target: 5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3' miRNA: 3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 6186 | 1.12 | 0.001118 |
Target: 5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3' miRNA: 3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 87131 | 0.7 | 0.587335 |
Target: 5'- -cGGCUCGgg-GgCUACCUcugcgacaacuuCCUCCCCg -3' miRNA: 3'- guCCGAGUaaaCgGAUGGG------------GGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 7251 | 0.79 | 0.187137 |
Target: 5'- --cGCUCAgcUUGCCUuuuuuCCCCCUCCCCc -3' miRNA: 3'- gucCGAGUa-AACGGAu----GGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 103041 | 0.71 | 0.536883 |
Target: 5'- gCGGGCcgCA---GCCgcguuucCCCCCUCCCCc -3' miRNA: 3'- -GUCCGa-GUaaaCGGau-----GGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 5084 | 0.7 | 0.60779 |
Target: 5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3' miRNA: 3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 66174 | 0.69 | 0.648858 |
Target: 5'- cCGGGCUgGcgccgGCC-GCCCCCUCUUCc -3' miRNA: 3'- -GUCCGAgUaaa--CGGaUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 5789 | 0.79 | 0.196263 |
Target: 5'- gGGGCUCAUUUgcaugaaagcaugGCCgaacGCCCCCggCCCCg -3' miRNA: 3'- gUCCGAGUAAA-------------CGGa---UGGGGGa-GGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 90035 | 0.73 | 0.40589 |
Target: 5'- --cGCUCugUUGUCUGCCCCCaCCCCc -3' miRNA: 3'- gucCGAGuaAACGGAUGGGGGaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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