Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6663 | 5' | -57.3 | NC_001847.1 | + | 124267 | 0.69 | 0.648858 |
Target: 5'- -cGGCUCcc---CCUuCCCCCUCCCg -3' miRNA: 3'- guCCGAGuaaacGGAuGGGGGAGGGg -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 113559 | 0.71 | 0.56701 |
Target: 5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3' miRNA: 3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 15912 | 0.7 | 0.577153 |
Target: 5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3' miRNA: 3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 16031 | 0.7 | 0.577153 |
Target: 5'- -cGGCccCA--UGCCUGCCCCgCcgCCCCg -3' miRNA: 3'- guCCGa-GUaaACGGAUGGGG-Ga-GGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 39773 | 0.7 | 0.60779 |
Target: 5'- uCGGGCaugUAUguugcGCCgccugGCCCCgCUCCCCu -3' miRNA: 3'- -GUCCGa--GUAaa---CGGa----UGGGG-GAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 107897 | 0.7 | 0.60779 |
Target: 5'- gCGGGCggCAgugcggcGCCUucuccuuCCCCUUCCCCu -3' miRNA: 3'- -GUCCGa-GUaaa----CGGAu------GGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 82106 | 0.69 | 0.628318 |
Target: 5'- aGGGCgccugCGUUUgcGCCUGCCgCCCgacgCCCg -3' miRNA: 3'- gUCCGa----GUAAA--CGGAUGG-GGGa---GGGg -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 120907 | 0.69 | 0.63859 |
Target: 5'- gCGGGCUCGgc-GUUUGCCCUCaccacgCCCCc -3' miRNA: 3'- -GUCCGAGUaaaCGGAUGGGGGa-----GGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 67068 | 0.69 | 0.642699 |
Target: 5'- aGGGUUCAg-UGCCgGCUccagcuuccccuucuCCCUCCCCu -3' miRNA: 3'- gUCCGAGUaaACGGaUGG---------------GGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 109936 | 0.71 | 0.546869 |
Target: 5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3' miRNA: 3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 40033 | 0.71 | 0.536883 |
Target: 5'- gCAGGCUCGUccGC--GCCCCCaaucgcgCCCCc -3' miRNA: 3'- -GUCCGAGUAaaCGgaUGGGGGa------GGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 118346 | 0.72 | 0.497632 |
Target: 5'- uGGGCUCuuugGCCUGCCCgaUgaCCCCg -3' miRNA: 3'- gUCCGAGuaaaCGGAUGGG--GgaGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 108999 | 1.12 | 0.001118 |
Target: 5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3' miRNA: 3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 78307 | 0.8 | 0.177938 |
Target: 5'- uCGGGCggcuggGCC-GCCCCCUCCCCg -3' miRNA: 3'- -GUCCGaguaaaCGGaUGGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 110064 | 0.79 | 0.187137 |
Target: 5'- --cGCUCAgcUUGCCUuuuuuCCCCCUCCCCc -3' miRNA: 3'- gucCGAGUa-AACGGAu----GGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 108602 | 0.79 | 0.196263 |
Target: 5'- gGGGCUCAUUUgcaugaaagcaugGCCgaacGCCCCCggCCCCg -3' miRNA: 3'- gUCCGAGUAAA-------------CGGa---UGGGGGa-GGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 126567 | 0.74 | 0.39731 |
Target: 5'- gGGGcCUgAUUUGCCUGUgCCCUCCCa -3' miRNA: 3'- gUCC-GAgUAAACGGAUGgGGGAGGGg -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 103513 | 0.73 | 0.414586 |
Target: 5'- aCAGaCUCGUcuuuaUUGCCgccgucgcGCCCCCUCCCUc -3' miRNA: 3'- -GUCcGAGUA-----AACGGa-------UGGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 68131 | 0.73 | 0.423396 |
Target: 5'- gCGGGCgagCGcgcGUCUGCCCCUUCUCCg -3' miRNA: 3'- -GUCCGa--GUaaaCGGAUGGGGGAGGGG- -5' |
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6663 | 5' | -57.3 | NC_001847.1 | + | 127012 | 0.73 | 0.441346 |
Target: 5'- gAGGCUCGUcgGCCcGCCCg--CCCCg -3' miRNA: 3'- gUCCGAGUAaaCGGaUGGGggaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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