Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6664 | 3' | -62.6 | NC_001847.1 | + | 18741 | 0.66 | 0.572365 |
Target: 5'- gGCCC-GGGGCCCagaGCGCC-GCcgC-CGCg -3' miRNA: 3'- -CGGGaCCCUGGG---CGCGGuCGa-GaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 4469 | 0.66 | 0.572365 |
Target: 5'- cGUCCUcGGcGCCCcccgcgucccugGCGCCGGCgucCUCGCc -3' miRNA: 3'- -CGGGA-CCcUGGG------------CGCGGUCGa--GAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 46337 | 0.66 | 0.572365 |
Target: 5'- cGCCCgcGGGG-CCGCGUCGGCgg-CAUc -3' miRNA: 3'- -CGGGa-CCCUgGGCGCGGUCGagaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 16997 | 0.66 | 0.572365 |
Target: 5'- cGCCCcucgGGGACgcagCGCGCCucgcagacGGC-CUCGCc -3' miRNA: 3'- -CGGGa---CCCUGg---GCGCGG--------UCGaGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 48186 | 0.66 | 0.572365 |
Target: 5'- cGUCCUGcuGugCCGCGCCGGCggC-CAg -3' miRNA: 3'- -CGGGACc-CugGGCGCGGUCGa-GaGUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 78128 | 0.66 | 0.572365 |
Target: 5'- cGCCaaaaGcGGGCgCGCGCCGGCcugcggCUCAUa -3' miRNA: 3'- -CGGga--C-CCUGgGCGCGGUCGa-----GAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 107015 | 0.66 | 0.572365 |
Target: 5'- aGUCCUcGGGCCCaacguCGCCGGC-CUCGg -3' miRNA: 3'- -CGGGAcCCUGGGc----GCGGUCGaGAGUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 107282 | 0.66 | 0.572365 |
Target: 5'- cGUCCUcGGcGCCCcccgcgucccugGCGCCGGCgucCUCGCc -3' miRNA: 3'- -CGGGA-CCcUGGG------------CGCGGUCGa--GAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 133572 | 0.66 | 0.562588 |
Target: 5'- cGCgCUGGcGcGCgCCGUGCUGGC-CUCGCg -3' miRNA: 3'- -CGgGACC-C-UG-GGCGCGGUCGaGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 125653 | 0.66 | 0.562588 |
Target: 5'- cGCCCUGGuccACCgGCGCgguccuggguuuCAGCUCUgGg -3' miRNA: 3'- -CGGGACCc--UGGgCGCG------------GUCGAGAgUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 38089 | 0.66 | 0.562588 |
Target: 5'- uGCUCcGGGACuuGC-CCAGC-CUgACg -3' miRNA: 3'- -CGGGaCCCUGggCGcGGUCGaGAgUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 22840 | 0.66 | 0.562588 |
Target: 5'- cGCCCUGGuccACCgGCGCgguccuggguuuCAGCUCUgGg -3' miRNA: 3'- -CGGGACCc--UGGgCGCG------------GUCGAGAgUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 38948 | 0.66 | 0.562588 |
Target: 5'- gGCCCgGGGGCCgcgaGCGCCAugGCggcggC-CGCg -3' miRNA: 3'- -CGGGaCCCUGGg---CGCGGU--CGa----GaGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 33682 | 0.66 | 0.562588 |
Target: 5'- cGCCCUugcggccgcgcGGcGGCaguuuCCGCGCCccccAGCUCUCGg -3' miRNA: 3'- -CGGGA-----------CC-CUG-----GGCGCGG----UCGAGAGUg -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 30759 | 0.66 | 0.562588 |
Target: 5'- cGCgCUGGcGcGCgCCGUGCUGGC-CUCGCg -3' miRNA: 3'- -CGgGACC-C-UG-GGCGCGGUCGaGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 52239 | 0.66 | 0.562588 |
Target: 5'- aGCCCccGGGcGCCgCGCGCCgcGGCUUggcugcggCGCg -3' miRNA: 3'- -CGGGa-CCC-UGG-GCGCGG--UCGAGa-------GUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 51289 | 0.66 | 0.562588 |
Target: 5'- cGCUCgGGGaagugGCCCGCGaggacgUAGCUCUgCACg -3' miRNA: 3'- -CGGGaCCC-----UGGGCGCg-----GUCGAGA-GUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 117035 | 0.66 | 0.561613 |
Target: 5'- uGCCCggcgGGGGCUCGCcgaggaggcggaaGCCucGCcCUCGCc -3' miRNA: 3'- -CGGGa---CCCUGGGCG-------------CGGu-CGaGAGUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 13964 | 0.66 | 0.552856 |
Target: 5'- gGCCCgUGGGAgCCCGCcccugGCCGGCaa--GCg -3' miRNA: 3'- -CGGG-ACCCU-GGGCG-----CGGUCGagagUG- -5' |
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6664 | 3' | -62.6 | NC_001847.1 | + | 123787 | 0.66 | 0.552856 |
Target: 5'- gGCCUcGGGGCCUGCGCggCGGCggcaGCg -3' miRNA: 3'- -CGGGaCCCUGGGCGCG--GUCGagagUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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