Results 1 - 20 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6665 | 3' | -68.6 | NC_001847.1 | + | 101161 | 0.66 | 0.356448 |
Target: 5'- gCCGGGGcCGGGgccGGGGucGGGGCGCggUCUAa -3' miRNA: 3'- -GGCCCCcGCCC---CCCU--CCUCGCG--GGAU- -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 119651 | 0.66 | 0.356448 |
Target: 5'- aCGGGGcagcCGGGcGGGAGGgcaacGGCgGCCCc- -3' miRNA: 3'- gGCCCCc---GCCC-CCCUCC-----UCG-CGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 76655 | 0.66 | 0.34918 |
Target: 5'- cCCGaGGGC--GGGGAGG-GCGCCUUu -3' miRNA: 3'- -GGCcCCCGccCCCCUCCuCGCGGGAu -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 108098 | 0.66 | 0.342018 |
Target: 5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3' miRNA: 3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 130007 | 0.66 | 0.342018 |
Target: 5'- gUGGGGGUGGGGGGGGGgaAGgGa---- -3' miRNA: 3'- gGCCCCCGCCCCCCUCC--UCgCgggau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 21506 | 0.66 | 0.342018 |
Target: 5'- gCCGGGcgcgccucGGCGGGGGccgcgcGGGccaacGCGCCCa- -3' miRNA: 3'- -GGCCC--------CCGCCCCCc-----UCCu----CGCGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 5285 | 0.66 | 0.342018 |
Target: 5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3' miRNA: 3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 27194 | 0.66 | 0.342018 |
Target: 5'- gUGGGGGUGGGGGGGGGgaAGgGa---- -3' miRNA: 3'- gGCCCCCGCCCCCCUCC--UCgCgggau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 51528 | 0.66 | 0.334963 |
Target: 5'- gCCGGcaGGCGGGGGc---GGCGCCCa- -3' miRNA: 3'- -GGCCc-CCGCCCCCcuccUCGCGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 21568 | 0.66 | 0.334963 |
Target: 5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3' miRNA: 3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 124381 | 0.66 | 0.334963 |
Target: 5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3' miRNA: 3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 29601 | 0.66 | 0.334263 |
Target: 5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3' miRNA: 3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 115927 | 0.66 | 0.334263 |
Target: 5'- -gGGGGGCugccgucGGGaacgagcaGGGAGGGGuCGCCgCUGg -3' miRNA: 3'- ggCCCCCG-------CCC--------CCCUCCUC-GCGG-GAU- -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 132414 | 0.66 | 0.334263 |
Target: 5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3' miRNA: 3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 105585 | 0.66 | 0.327326 |
Target: 5'- gCCGGcacGGCGuccgugcGGGGGAacucGAGCGCCCg- -3' miRNA: 3'- -GGCCc--CCGC-------CCCCCUc---CUCGCGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 124720 | 0.66 | 0.323897 |
Target: 5'- gCGGGGGCggcagcgcgaaccgcGcGGGGGAGGgccgucauaaAGCgGCCCc- -3' miRNA: 3'- gGCCCCCG---------------C-CCCCCUCC----------UCG-CGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 31816 | 0.66 | 0.321174 |
Target: 5'- gUGGGcGGCGcGGGGGcagagugcgAGGAcccuacguucgcGCGCCCg- -3' miRNA: 3'- gGCCC-CCGC-CCCCC---------UCCU------------CGCGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 121401 | 0.67 | 0.31444 |
Target: 5'- aCCGGGGGCaGGagcugcguggaGGGcGGAGCcguugagcgGCCCg- -3' miRNA: 3'- -GGCCCCCGcCC-----------CCCuCCUCG---------CGGGau -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 90754 | 0.67 | 0.31444 |
Target: 5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3' miRNA: 3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5' |
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6665 | 3' | -68.6 | NC_001847.1 | + | 16584 | 0.67 | 0.31444 |
Target: 5'- gCGGGGuCGGGGcGGcguGGGGUGCCg-- -3' miRNA: 3'- gGCCCCcGCCCC-CCu--CCUCGCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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