miRNA display CGI


Results 21 - 40 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 131981 0.66 0.957442
Target:  5'- ----gAGGCGCuggagGCGGCccgcCGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCG-----CGCUGua--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 131881 0.72 0.668873
Target:  5'- -----cGGcCGCGCGGCGcCgGCGCCCCu -3'
miRNA:   3'- guauauUC-GCGCGCUGUaG-CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 131824 0.67 0.907192
Target:  5'- -----cGGCGCcgGCGGCAgcgGCGCCCg -3'
miRNA:   3'- guauauUCGCG--CGCUGUag-CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 131662 0.68 0.880237
Target:  5'- uCAUGUGcgagcucucGGCGCGcCGGCG-CGCGCUUg -3'
miRNA:   3'- -GUAUAU---------UCGCGC-GCUGUaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 131647 0.66 0.935394
Target:  5'- ----gGAGCGUGaCGGCGcCGCuGCCgCCg -3'
miRNA:   3'- guauaUUCGCGC-GCUGUaGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 131438 0.71 0.730264
Target:  5'- ------cGCGCGCGAUugcCGCGCCUa -3'
miRNA:   3'- guauauuCGCGCGCUGua-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 131322 0.68 0.872914
Target:  5'- ----gAGGCGUGgccCGGCAgCGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCGC---GCUGUaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 131157 0.66 0.935394
Target:  5'- -------nCGCGgGGCcgCGCGCCCg -3'
miRNA:   3'- guauauucGCGCgCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 131133 0.67 0.907192
Target:  5'- ----gAGGCGgGCGcCGggcccgGCGCCCCg -3'
miRNA:   3'- guauaUUCGCgCGCuGUag----CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 130956 0.69 0.865366
Target:  5'- ------uGCGCGCGGCccacgggcgCGCGgCCCa -3'
miRNA:   3'- guauauuCGCGCGCUGua-------GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 130860 0.72 0.689561
Target:  5'- ----aAGGCGC-CGGCG-CGCGCCUCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 130760 0.67 0.924858
Target:  5'- ---cUGGGC-CGCGGCGcgCGCGCUCg -3'
miRNA:   3'- guauAUUCGcGCGCUGUa-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 130535 0.66 0.935394
Target:  5'- ----aGAGCGCuGCGACGaCGUgGCCgCCu -3'
miRNA:   3'- guauaUUCGCG-CGCUGUaGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 130510 0.66 0.944941
Target:  5'- ----gAGGCGCGCGAgCGccggCGgGCCgCCc -3'
miRNA:   3'- guauaUUCGCGCGCU-GUa---GCgCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 129745 0.73 0.627196
Target:  5'- ---cUGAGCGCGCGGCc-UGUGCCgCCg -3'
miRNA:   3'- guauAUUCGCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 129718 0.69 0.84144
Target:  5'- ----cGAGaCGCGCGGCuaacCGCGCUCUc -3'
miRNA:   3'- guauaUUC-GCGCGCUGua--GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 129524 0.69 0.849623
Target:  5'- ------cGCGCGgGACcgCgGCGCCCa -3'
miRNA:   3'- guauauuCGCGCgCUGuaG-CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 129483 0.75 0.544512
Target:  5'- ------cGCGCGCGACggCGCGCaUCCg -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 129392 0.69 0.824489
Target:  5'- gCGUu--GGCGCGCcgGACGgcggUGCGUCCCc -3'
miRNA:   3'- -GUAuauUCGCGCG--CUGUa---GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 129196 0.67 0.924858
Target:  5'- ------cGCGCGCGuACGUaCGCGCgCUu -3'
miRNA:   3'- guauauuCGCGCGC-UGUA-GCGCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.