miRNA display CGI


Results 21 - 40 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 8653 1.13 0.002214
Target:  5'- aCAUAUAAGCGCGCGACAUCGCGCCCCa -3'
miRNA:   3'- -GUAUAUUCGCGCGCUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 127239 0.74 0.554702
Target:  5'- ----gAAGCG-GCGGCcgccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGua---GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 120697 0.74 0.554702
Target:  5'- ----cGAGCaGCGCGGCcgCGCGCUCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 64754 0.75 0.504425
Target:  5'- cCGUAaucuuGGCcaGCGCGAgcUCGCGCCCCg -3'
miRNA:   3'- -GUAUau---UCG--CGCGCUguAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 122018 0.78 0.384629
Target:  5'- ----cAGGCgGCGCGGCGccgcccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCG-CGCGCUGUa------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 99210 0.74 0.585577
Target:  5'- -----cGGcCGCGCGGCggCGCGCCgCCa -3'
miRNA:   3'- guauauUC-GCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 29342 0.74 0.575241
Target:  5'- ------cGCGCGCGGCuccagcgCGCGgCCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-----GCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 92711 0.79 0.320881
Target:  5'- ----cGAGCGCGCGcCAUCGCcGCCaCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUAGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 47348 0.75 0.524323
Target:  5'- --aGUAAGCacuGCGCGuaGUCGUGCCCCc -3'
miRNA:   3'- guaUAUUCG---CGCGCugUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 33694 0.75 0.524323
Target:  5'- ------cGCGCgGCGGCAguuucCGCGCCCCc -3'
miRNA:   3'- guauauuCGCG-CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 85192 0.8 0.306232
Target:  5'- ---cUAGGUGCGCGGCAcCGCGCgCCa -3'
miRNA:   3'- guauAUUCGCGCGCUGUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 44805 0.8 0.306232
Target:  5'- ----aAAGCgccgaGCGCGGCAcCGCGCCCCa -3'
miRNA:   3'- guauaUUCG-----CGCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 106302 0.74 0.606347
Target:  5'- ------cGCGCGCGGCcgCGCGUUCUa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 56502 0.74 0.585577
Target:  5'- ------cGCGCGCGAC--CGCGCCgCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 129483 0.75 0.544512
Target:  5'- ------cGCGCGCGACggCGCGCaUCCg -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 41851 0.76 0.465667
Target:  5'- ------cGCGCGCGGCcugCGCGCCgCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 23665 0.77 0.4195
Target:  5'- uGUGUGGGCuugggGCGCGAUGUCGCGCgCUu -3'
miRNA:   3'- gUAUAUUCG-----CGCGCUGUAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 90447 0.81 0.271868
Target:  5'- --aAUAAGCGCGCGGuCcgCGCGgCCCa -3'
miRNA:   3'- guaUAUUCGCGCGCU-GuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 41205 0.75 0.514335
Target:  5'- -----cGGCGaCGCG-CGUCGCGCCCg -3'
miRNA:   3'- guauauUCGC-GCGCuGUAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 118496 0.75 0.528339
Target:  5'- -cUGUAGGCGCGgGGCcccgacggcaaagccGcCGCGCCCCc -3'
miRNA:   3'- guAUAUUCGCGCgCUG---------------UaGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.