miRNA display CGI


Results 41 - 60 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 131647 0.66 0.935394
Target:  5'- ----gGAGCGUGaCGGCGcCGCuGCCgCCg -3'
miRNA:   3'- guauaUUCGCGC-GCUGUaGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 79408 0.66 0.953514
Target:  5'- ---cUGAGCGCGUacuagGACcgcCGUGCCCg -3'
miRNA:   3'- guauAUUCGCGCG-----CUGua-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 134150 0.66 0.935394
Target:  5'- ----gGAGCGCGUGcCGcCGCcggcggcggaaGCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCuGUaGCG-----------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 5344 0.66 0.949348
Target:  5'- aCGUAguacuGGuCGCGCGGCGcggcCGgGCCCa -3'
miRNA:   3'- -GUAUau---UC-GCGCGCUGUa---GCgCGGGg -5'
6665 5' -53.9 NC_001847.1 + 108967 0.66 0.940291
Target:  5'- --gGUGAGCgagcagggagGCGCGGCaAUUGUGUCCa -3'
miRNA:   3'- guaUAUUCG----------CGCGCUG-UAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 69020 0.66 0.935394
Target:  5'- --gAUGAGCuGCuGCGguGCGUCGCGCUg- -3'
miRNA:   3'- guaUAUUCG-CG-CGC--UGUAGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 16209 0.66 0.940291
Target:  5'- ------cGCGCcauGCGGCGUUGCaGCCuCCg -3'
miRNA:   3'- guauauuCGCG---CGCUGUAGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 54245 0.66 0.935394
Target:  5'- --cGUGGGCaGCGCuGCgGUgGCGCCCg -3'
miRNA:   3'- guaUAUUCG-CGCGcUG-UAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 44918 0.66 0.935394
Target:  5'- ------cGUGCGCGACGcgCGCGUgCUg -3'
miRNA:   3'- guauauuCGCGCGCUGUa-GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 33801 0.66 0.940291
Target:  5'- ------uGCGCGCGGCGcccggCGCGCUg- -3'
miRNA:   3'- guauauuCGCGCGCUGUa----GCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 32663 0.66 0.953514
Target:  5'- gGUGgacGGCGCcgGCGGCG-CGgGCCCg -3'
miRNA:   3'- gUAUau-UCGCG--CGCUGUaGCgCGGGg -5'
6665 5' -53.9 NC_001847.1 + 49293 0.66 0.939812
Target:  5'- ----gGAGC-CGCGAC-UCGCugcuggcggugcuGCCCCu -3'
miRNA:   3'- guauaUUCGcGCGCUGuAGCG-------------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 63166 0.66 0.935394
Target:  5'- ----cAGGCGCGC-ACgucggucgcgGUCGCGCgCCa -3'
miRNA:   3'- guauaUUCGCGCGcUG----------UAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 43794 0.66 0.935394
Target:  5'- ------cGCGCGCGcCggCGCGCCg- -3'
miRNA:   3'- guauauuCGCGCGCuGuaGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 40545 0.66 0.953514
Target:  5'- ------cGUGCuGCGGCAgCGCGCCgCu -3'
miRNA:   3'- guauauuCGCG-CGCUGUaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 82817 0.66 0.949348
Target:  5'- ----cGGGCGaagGCGACggCGCGaCCCg -3'
miRNA:   3'- guauaUUCGCg--CGCUGuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 76293 0.66 0.953514
Target:  5'- -----uGGCGCGCGGacgcaGCGCCgCg -3'
miRNA:   3'- guauauUCGCGCGCUguag-CGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 60644 0.66 0.935394
Target:  5'- -----cAGCGCGCGGCGcaggCGCGgCUg -3'
miRNA:   3'- guauauUCGCGCGCUGUa---GCGCgGGg -5'
6665 5' -53.9 NC_001847.1 + 106544 0.66 0.953108
Target:  5'- -----uAGCGCGCGGCcgccUCGCggaucucggggcaGUCCCa -3'
miRNA:   3'- guauauUCGCGCGCUGu---AGCG-------------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 134335 0.66 0.953514
Target:  5'- ------cGUcCGCGGCGUCGUcCCCCg -3'
miRNA:   3'- guauauuCGcGCGCUGUAGCGcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.