miRNA display CGI


Results 41 - 60 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 47348 0.75 0.524323
Target:  5'- --aGUAAGCacuGCGCGuaGUCGUGCCCCc -3'
miRNA:   3'- guaUAUUCG---CGCGCugUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 70259 0.75 0.504425
Target:  5'- ----cGGGCGCGCGGCGUugcucucggcgCGCGCCUg -3'
miRNA:   3'- guauaUUCGCGCGCUGUA-----------GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 33694 0.75 0.524323
Target:  5'- ------cGCGCgGCGGCAguuucCGCGCCCCc -3'
miRNA:   3'- guauauuCGCG-CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 41205 0.75 0.514335
Target:  5'- -----cGGCGaCGCG-CGUCGCGCCCg -3'
miRNA:   3'- guauauUCGC-GCGCuGUAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 129483 0.75 0.544512
Target:  5'- ------cGCGCGCGACggCGCGCaUCCg -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 64754 0.75 0.504425
Target:  5'- cCGUAaucuuGGCcaGCGCGAgcUCGCGCCCCg -3'
miRNA:   3'- -GUAUau---UCG--CGCGCUguAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 37301 0.75 0.534384
Target:  5'- uGUAUAAgGCGCGCG-CAgcccgCGCGCgCCg -3'
miRNA:   3'- gUAUAUU-CGCGCGCuGUa----GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 77986 0.75 0.524323
Target:  5'- -----uGGCGgGCGGCGagCGCGCCCUg -3'
miRNA:   3'- guauauUCGCgCGCUGUa-GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 118496 0.75 0.528339
Target:  5'- -cUGUAGGCGCGgGGCcccgacggcaaagccGcCGCGCCCCc -3'
miRNA:   3'- guAUAUUCGCGCgCUG---------------UaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 96923 0.74 0.606347
Target:  5'- gCGUAgAGGCGCGCGGCc-CGgGCCuCCg -3'
miRNA:   3'- -GUAUaUUCGCGCGCUGuaGCgCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 14449 0.74 0.554702
Target:  5'- ----cGAGCGCGCGGCcgCGCuGCUCg -3'
miRNA:   3'- guauaUUCGCGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 67331 0.74 0.554702
Target:  5'- gCGUAUAGGUGCaGCaGCAUCGCGCggacguggCCCu -3'
miRNA:   3'- -GUAUAUUCGCG-CGcUGUAGCGCG--------GGG- -5'
6665 5' -53.9 NC_001847.1 + 48943 0.74 0.575241
Target:  5'- ----cAGGCGCGCGACuggacCGC-CCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGua---GCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 132155 0.74 0.575241
Target:  5'- ------cGCGCGCGGCuccagcgCGCGgCCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-----GCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 35205 0.74 0.575241
Target:  5'- ------cGCGCGCGGCuggGCGCCCUg -3'
miRNA:   3'- guauauuCGCGCGCUGuagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 124915 0.74 0.584542
Target:  5'- ----cAGGCGCgccggggGCGACAgcgggCGCGCCCUg -3'
miRNA:   3'- guauaUUCGCG-------CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 30200 0.74 0.585577
Target:  5'- -----cGGUGCGCGGCG-CGCGCgCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 96622 0.74 0.595948
Target:  5'- gGUGUAcggccagagcacAGCGCcgGCGACcgCGcCGCCCCc -3'
miRNA:   3'- gUAUAU------------UCGCG--CGCUGuaGC-GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 68493 0.74 0.585577
Target:  5'- ----cAAGCGCGCcaGGCAguccacaaaCGCGCCCCc -3'
miRNA:   3'- guauaUUCGCGCG--CUGUa--------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 21175 0.74 0.585577
Target:  5'- ----gGAGCGCuucuGCGGCGaCGCGCCCg -3'
miRNA:   3'- guauaUUCGCG----CGCUGUaGCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.