miRNA display CGI


Results 41 - 60 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 5622 0.7 0.815737
Target:  5'- --cGUGGGCGcCGCGGucCcgCGCGCgCCa -3'
miRNA:   3'- guaUAUUCGC-GCGCU--GuaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 5678 0.67 0.907192
Target:  5'- ------cGCGCGCGGCggCG-GCCgCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCgCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 5779 0.72 0.668873
Target:  5'- --------aGCGCGGCGUCuaGCCCCg -3'
miRNA:   3'- guauauucgCGCGCUGUAGcgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 5949 0.71 0.769555
Target:  5'- ----cAAGCGCGCGuACGUaCGCGCgCg -3'
miRNA:   3'- guauaUUCGCGCGC-UGUA-GCGCGgGg -5'
6665 5' -53.9 NC_001847.1 + 6060 0.66 0.940291
Target:  5'- --gGUGAGCaagcagggagGCGCGGCaAUUGUGUCCa -3'
miRNA:   3'- guaUAUUCG----------CGCGCUG-UAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 6115 0.68 0.880237
Target:  5'- ----cGAG-GCGCGGCGcgaGCGCCUCg -3'
miRNA:   3'- guauaUUCgCGCGCUGUag-CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 6154 0.66 0.940291
Target:  5'- --gGUGAGCgagcagggagGCGCGGCaAUUGUGUCCa -3'
miRNA:   3'- guaUAUUCG----------CGCGCUG-UAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 6322 0.67 0.907192
Target:  5'- ------uGCGCGCGGCcacGUaCGCggguGCCCCg -3'
miRNA:   3'- guauauuCGCGCGCUG---UA-GCG----CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 6906 0.72 0.679237
Target:  5'- ----cGAGCGCGCG----CGCGCCCUg -3'
miRNA:   3'- guauaUUCGCGCGCuguaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 7853 0.66 0.940291
Target:  5'- -cUGUAAGCGCGauCGAUguAUCGgGCCg- -3'
miRNA:   3'- guAUAUUCGCGC--GCUG--UAGCgCGGgg -5'
6665 5' -53.9 NC_001847.1 + 7906 0.69 0.849623
Target:  5'- ----gGGGCGCGCGGCGgccgcCGCuucuucCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGUa----GCGc-----GGGG- -5'
6665 5' -53.9 NC_001847.1 + 8589 0.66 0.957442
Target:  5'- gGUGguuAGcCGCGCGAgCGUCaGCcgcagcgcaaGCCCCg -3'
miRNA:   3'- gUAUau-UC-GCGCGCU-GUAG-CG----------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 8653 1.13 0.002214
Target:  5'- aCAUAUAAGCGCGCGACAUCGCGCCCCa -3'
miRNA:   3'- -GUAUAUUCGCGCGCUGUAGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 9014 0.68 0.900812
Target:  5'- ------cGUGCGCGGC--CGCGaCCCCc -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGC-GGGG- -5'
6665 5' -53.9 NC_001847.1 + 9523 0.66 0.957442
Target:  5'- ----cGAGCGgGCGGCGcgcuaGCGUCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGUag---CGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 10059 0.68 0.894191
Target:  5'- aCAUcuuGGcCGCGCgGGCccaGCGCCCCg -3'
miRNA:   3'- -GUAuauUC-GCGCG-CUGuagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 10065 0.67 0.93025
Target:  5'- ------cGCGCGCGcugcGCcgCGCGCUCg -3'
miRNA:   3'- guauauuCGCGCGC----UGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 10174 0.67 0.924858
Target:  5'- ------cGCGCGCGGCuuaagcagCGCGCUgCu -3'
miRNA:   3'- guauauuCGCGCGCUGua------GCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 10220 0.66 0.935394
Target:  5'- ----aGGGCGCGCccGCuGUCGC-CCCCg -3'
miRNA:   3'- guauaUUCGCGCGc-UG-UAGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 10264 0.66 0.943572
Target:  5'- --gAUGAGCGgGCGcauaaaaaccgcggGCcgCGCGCUCg -3'
miRNA:   3'- guaUAUUCGCgCGC--------------UGuaGCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.