miRNA display CGI


Results 41 - 60 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 129051 0.66 0.957442
Target:  5'- ------cGCGgGCGuC-UCGCGCCuCCg -3'
miRNA:   3'- guauauuCGCgCGCuGuAGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 128221 0.66 0.935394
Target:  5'- uCGUGUGcaccuucaacAGCGCGCagGGCGcgCGCGCgCUCg -3'
miRNA:   3'- -GUAUAU----------UCGCGCG--CUGUa-GCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 128187 0.68 0.880237
Target:  5'- ----gAAGCGCcgccGCGACccCGCGCCUg -3'
miRNA:   3'- guauaUUCGCG----CGCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 127239 0.74 0.554702
Target:  5'- ----gAAGCG-GCGGCcgccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGua---GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 126478 0.77 0.4195
Target:  5'- uGUGUGGGCuugggGCGCGAUGUCGCGCgCUu -3'
miRNA:   3'- gUAUAUUCG-----CGCGCUGUAGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 126071 0.69 0.8576
Target:  5'- ------cGCGCGCGuaGCAgccUGCGCUCCa -3'
miRNA:   3'- guauauuCGCGCGC--UGUa--GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 125385 0.69 0.863059
Target:  5'- ----gGGGCGCGCGAgGUCgagguggaccgacgGCgacuGCCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUgUAG--------------CG----CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 125288 0.66 0.957442
Target:  5'- -uUGUAGGCGUGCGucgguccacacCAggGCGCCUUg -3'
miRNA:   3'- guAUAUUCGCGCGCu----------GUagCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 125079 0.74 0.595948
Target:  5'- ----cGAGCGCGCGGCGcagCGCGCgCg -3'
miRNA:   3'- guauaUUCGCGCGCUGUa--GCGCGgGg -5'
6665 5' -53.9 NC_001847.1 + 125070 0.7 0.779084
Target:  5'- ------cGCGCGCGGCGggGCGCugggCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGUagCGCG----GGG- -5'
6665 5' -53.9 NC_001847.1 + 124980 0.68 0.872914
Target:  5'- ---uUAAGcCGCGCG-CGUCGaaaaaGCCCUc -3'
miRNA:   3'- guauAUUC-GCGCGCuGUAGCg----CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 124915 0.74 0.584542
Target:  5'- ----cAGGCGCgccggggGCGACAgcgggCGCGCCCUg -3'
miRNA:   3'- guauaUUCGCG-------CGCUGUa----GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 124866 0.7 0.784736
Target:  5'- ----cGAGCGCGCGGCccgcgguuuuuaUGCGCCCg -3'
miRNA:   3'- guauaUUCGCGCGCUGua----------GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 124340 0.68 0.900812
Target:  5'- -----cAGCGCGCGGCAgua-GCCCa -3'
miRNA:   3'- guauauUCGCGCGCUGUagcgCGGGg -5'
6665 5' -53.9 NC_001847.1 + 123420 0.66 0.953514
Target:  5'- -----cAGCaGCGCGuCAUaCGUGCCgCCg -3'
miRNA:   3'- guauauUCG-CGCGCuGUA-GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 123281 0.69 0.856812
Target:  5'- cCGUGguAGCaGCGCGACucaaGUCcauccuccgcuagGCGCCCCc -3'
miRNA:   3'- -GUAUauUCG-CGCGCUG----UAG-------------CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 123101 0.72 0.71005
Target:  5'- -----cAGCGCGCagGGCGUCcaGCGCUCCg -3'
miRNA:   3'- guauauUCGCGCG--CUGUAG--CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 122871 0.66 0.940291
Target:  5'- --gGUGGGCGCgcuuggacucGCGggacugguggGCAUCGCaGCCCUc -3'
miRNA:   3'- guaUAUUCGCG----------CGC----------UGUAGCG-CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 122831 0.68 0.900812
Target:  5'- ----cGGGCGCGCccaccgGGCc-CGCGCCCUg -3'
miRNA:   3'- guauaUUCGCGCG------CUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 122748 0.73 0.627196
Target:  5'- ------uGCGCGCGucaccgaccACA-CGCGCCCCg -3'
miRNA:   3'- guauauuCGCGCGC---------UGUaGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.