miRNA display CGI


Results 41 - 60 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 85192 0.8 0.306232
Target:  5'- ---cUAGGUGCGCGGCAcCGCGCgCCa -3'
miRNA:   3'- guauAUUCGCGCGCUGUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 106302 0.74 0.606347
Target:  5'- ------cGCGCGCGGCcgCGCGUUCUa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 106410 0.72 0.668873
Target:  5'- ------cGCGCGCGGCGaCGCuGCCCg -3'
miRNA:   3'- guauauuCGCGCGCUGUaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 122366 0.73 0.658478
Target:  5'- -----cGGCGUGCGGCAcagCGCGUCCa -3'
miRNA:   3'- guauauUCGCGCGCUGUa--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 56502 0.74 0.585577
Target:  5'- ------cGCGCGCGAC--CGCGCCgCCa -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 41851 0.76 0.465667
Target:  5'- ------cGCGCGCGGCcugCGCGCCgCCg -3'
miRNA:   3'- guauauuCGCGCGCUGua-GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 44805 0.8 0.306232
Target:  5'- ----aAAGCgccgaGCGCGGCAcCGCGCCCCa -3'
miRNA:   3'- guauaUUCG-----CGCGCUGUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 90447 0.81 0.271868
Target:  5'- --aAUAAGCGCGCGGuCcgCGCGgCCCa -3'
miRNA:   3'- guaUAUUCGCGCGCU-GuaGCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 41205 0.75 0.514335
Target:  5'- -----cGGCGaCGCG-CGUCGCGCCCg -3'
miRNA:   3'- guauauUCGC-GCGCuGUAGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 127239 0.74 0.554702
Target:  5'- ----gAAGCG-GCGGCcgccgCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGua---GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 129483 0.75 0.544512
Target:  5'- ------cGCGCGCGACggCGCGCaUCCg -3'
miRNA:   3'- guauauuCGCGCGCUGuaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 70259 0.75 0.504425
Target:  5'- ----cGGGCGCGCGGCGUugcucucggcgCGCGCCUg -3'
miRNA:   3'- guauaUUCGCGCGCUGUA-----------GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 82633 0.79 0.3284
Target:  5'- ----cGGGcCGCGCGGCcgCGCGCUCCg -3'
miRNA:   3'- guauaUUC-GCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 61267 0.73 0.627196
Target:  5'- ----gGGGCGC-CGGCGgaacugaCGCGCCCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUa------GCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 56731 0.73 0.627196
Target:  5'- ------cGCGCGCGcCAgcagCGCGCCCg -3'
miRNA:   3'- guauauuCGCGCGCuGUa---GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 87270 0.74 0.585577
Target:  5'- ----cGGGCGCGCGcGCGcugCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCGC-UGUa--GCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 85090 0.73 0.648061
Target:  5'- ------cGCGCGCGGacccgcggccgcCAcCGCGCCCCg -3'
miRNA:   3'- guauauuCGCGCGCU------------GUaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 39833 0.66 0.957442
Target:  5'- ----cGAGCGCuuccuGCGugG-CGCGCgCCa -3'
miRNA:   3'- guauaUUCGCG-----CGCugUaGCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 118188 0.72 0.668873
Target:  5'- -----cGGUGCGCGACGgcauCGCCCCg -3'
miRNA:   3'- guauauUCGCGCGCUGUagc-GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 90697 0.73 0.637631
Target:  5'- ------cGCGCGCGugccgcGCGcCGCGCCCCc -3'
miRNA:   3'- guauauuCGCGCGC------UGUaGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.