miRNA display CGI


Results 61 - 80 of 698 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 104192 0.66 0.935394
Target:  5'- ----cGAGCGC-CGGCAgcaCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCGcGCUGUa--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 106626 0.66 0.953514
Target:  5'- ----cGGGCG-GCGGCggCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 117427 0.66 0.953514
Target:  5'- -------uCGCGCGGC--UGCGCCCUg -3'
miRNA:   3'- guauauucGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 69020 0.66 0.935394
Target:  5'- --gAUGAGCuGCuGCGguGCGUCGCGCUg- -3'
miRNA:   3'- guaUAUUCG-CG-CGC--UGUAGCGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 79408 0.66 0.953514
Target:  5'- ---cUGAGCGCGUacuagGACcgcCGUGCCCg -3'
miRNA:   3'- guauAUUCGCGCG-----CUGua-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 49952 0.66 0.949348
Target:  5'- -----uGGCGCGCGGugcCGCGCaCCUa -3'
miRNA:   3'- guauauUCGCGCGCUguaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 110666 0.66 0.940291
Target:  5'- -cUGUAAGCGCGauCGAUguAUCGgGCCg- -3'
miRNA:   3'- guAUAUUCGCGC--GCUG--UAGCgCGGgg -5'
6665 5' -53.9 NC_001847.1 + 34083 0.66 0.935394
Target:  5'- ----gGAGCGCGUGGCGgccgccguggcUCGCGCg-- -3'
miRNA:   3'- guauaUUCGCGCGCUGU-----------AGCGCGggg -5'
6665 5' -53.9 NC_001847.1 + 73284 0.66 0.953514
Target:  5'- ----cGGGCGCuCGGCAggCGCGgCCUa -3'
miRNA:   3'- guauaUUCGCGcGCUGUa-GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 103907 0.66 0.953514
Target:  5'- ----cGGGCGcCGCGGCcgCgggcgGCGCCgCCg -3'
miRNA:   3'- guauaUUCGC-GCGCUGuaG-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 10264 0.66 0.943572
Target:  5'- --gAUGAGCGgGCGcauaaaaaccgcggGCcgCGCGCUCg -3'
miRNA:   3'- guaUAUUCGCgCGC--------------UGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 4428 0.66 0.944941
Target:  5'- ----cGAGCGCGCGccGCAgggaaaCGCGCaCgCCg -3'
miRNA:   3'- guauaUUCGCGCGC--UGUa-----GCGCG-G-GG- -5'
6665 5' -53.9 NC_001847.1 + 1216 0.66 0.935394
Target:  5'- gGUGUucuuuuAGCGCGCGG----GCGCCCg -3'
miRNA:   3'- gUAUAu-----UCGCGCGCUguagCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 131647 0.66 0.935394
Target:  5'- ----gGAGCGUGaCGGCGcCGCuGCCgCCg -3'
miRNA:   3'- guauaUUCGCGC-GCUGUaGCG-CGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 93576 0.66 0.935394
Target:  5'- ----aAGGCGCGCucgGACAcgaCGCGCUCg -3'
miRNA:   3'- guauaUUCGCGCG---CUGUa--GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 60127 0.66 0.944941
Target:  5'- --cGUGAGCGagGgGGCGUCGgCGCCg- -3'
miRNA:   3'- guaUAUUCGCg-CgCUGUAGC-GCGGgg -5'
6665 5' -53.9 NC_001847.1 + 54245 0.66 0.935394
Target:  5'- --cGUGGGCaGCGCuGCgGUgGCGCCCg -3'
miRNA:   3'- guaUAUUCG-CGCGcUG-UAgCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 60468 0.66 0.935394
Target:  5'- ----cGGGCGCGUccGcCAUgGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCGCG--CuGUAgCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 131157 0.66 0.935394
Target:  5'- -------nCGCGgGGCcgCGCGCCCg -3'
miRNA:   3'- guauauucGCGCgCUGuaGCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 113033 0.66 0.935394
Target:  5'- ----aGGGCGCGCccGCuGUCGC-CCCCg -3'
miRNA:   3'- guauaUUCGCGCGc-UG-UAGCGcGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.